From: Junio C Hamano <gitster@pobox.com>
Date: Wed, 18 Mar 2009 01:58:02 +0000 (-0700)
Subject: Merge branch 'rs/color-grep'
X-Git-Tag: v1.6.3-rc0~144
X-Git-Url: https://www.git.lorimer.id.au/gitweb.git/diff_plain/b332368de87fba4fd9e6f8c163240f14ca00a9ea?hp=6e89ec0f1e716c11bf7fa214b4c7b975ea77c736

Merge branch 'rs/color-grep'

* rs/color-grep:
grep: prefer builtin over external one when coloring results
grep: cast printf %.*s "precision" argument explicitly to int
grep: add support for coloring with external greps
grep: color patterns in output
grep: add pmatch and eflags arguments to match_one_pattern()
grep: remove grep_opt argument from match_expr_eval()
grep: micro-optimize hit collection for AND nodes
---

diff --git a/Documentation/CodingGuidelines b/Documentation/CodingGuidelines
index 0d7fa9cca9..b8bf618a30 100644
--- a/Documentation/CodingGuidelines
+++ b/Documentation/CodingGuidelines
@@ -129,3 +129,6 @@ For C programs:
    used in the git core command set (unless your command is clearly
    separate from it, such as an importer to convert random-scm-X
    repositories to git).
+
+ - When we pass <string, length> pair to functions, we should try to
+   pass them in that order.
diff --git a/Documentation/RelNotes-1.6.2.1.txt b/Documentation/RelNotes-1.6.2.1.txt
index 3a2d3bf849..dfa36416af 100644
--- a/Documentation/RelNotes-1.6.2.1.txt
+++ b/Documentation/RelNotes-1.6.2.1.txt
@@ -4,3 +4,16 @@ GIT v1.6.2.1 Release Notes
 Fixes since v1.6.2
 ------------------
 
+* .gitignore learned to handle backslash as a quoting mechanism for
+  comment introduction character "#".
+
+* timestamp output in --date=relative mode used to display timestamps that
+  are long time ago in the default mode; it now uses "N years M months
+  ago", and "N years ago".
+
+* git-add -i/-p now works with non-ASCII pathnames.
+
+* "git hash-object -w" did not read from the configuration file from the
+  correct .git directory.
+
+* git-send-email learned to correctly handle multiple Cc: addresses.
diff --git a/Documentation/RelNotes-1.6.3.txt b/Documentation/RelNotes-1.6.3.txt
index 2ab2328316..679ad28b9d 100644
--- a/Documentation/RelNotes-1.6.3.txt
+++ b/Documentation/RelNotes-1.6.3.txt
@@ -32,6 +32,54 @@ Updates since v1.6.2
 
 (usability, bells and whistles)
 
+* "--pretty=<style>" option to the log family of commands can now be
+  spelled as "--format=<style>".  In addition, --format=%formatstring
+  is a short-hand for --pretty=tformat:%formatstring.
+
+* "--oneline" is a synonym for "--pretty=oneline --abbrev=commit".
+
+* If you realize that you botched the patch when you are editing hunks
+  with the 'edit' action in git-add -i/-p, you can abort the editor to
+  tell git not to apply it.
+
+* git-archive learned --output=<file> option.
+
+* git-bisect shows not just the number of remaining commits whose goodness
+  is unknown, but also shows the estimated number of remaining rounds.
+
+* You can give --date=<format> option to git-blame.
+
+* git-branch -r shows HEAD symref that points at a remote branch in
+  interest of each tracked remote repository.
+
+* git-config learned -e option to open an editor to edit the config file
+  directly.
+
+* git-clone runs post-checkout hook when run without --no-checkout.
+
+* git-format-patch can be told to use attachment with a new configuration,
+  format.attach.
+
+* git-format-patch can be told to produce deep or shallow message threads.
+
+* git-imap-send learned to work around Thunderbird's inability to easily
+  disable format=flowed with a new configuration, imap.preformattedHTML.
+
+* git-rebase can be told to rebase the series even if your branch is a
+  descendant of the commit you are rebasing onto with --force-rebase
+  option.
+
+* git-rebase can be told to report diffstat with the --stat option.
+
+* git-send-email learned --confirm option to review the Cc: list before
+  sending the messages out.
+
+(developers)
+
+* Test scripts can be run under valgrind.
+
+* Makefile learned 'coverage' option to run the test suites with
+  coverage tracking enabled.
 
 Fixes since v1.6.2
 ------------------
@@ -42,3 +90,15 @@ release, unless otherwise noted.
 Here are fixes that this release has, but have not been backported to
 v1.6.2.X series.
 
+* 'git-submodule add' did not tolerate extra slashes and ./ in the
+  path it accepted from the command line; it now is more lenient
+ (if needed, backport by merging db75ada).
+
+* git-gc spent excessive amount of time to decide if an object appears
+  in a locally existing pack (if needed, backport by merging 69e020a).
+
+---
+exec >/var/tmp/1
+O=v1.6.2.1-135-g7d65c21
+echo O=$(git describe master)
+git shortlog --no-merges $O..master ^maint
diff --git a/Documentation/blame-options.txt b/Documentation/blame-options.txt
index df2a7c1641..63fc197fbe 100644
--- a/Documentation/blame-options.txt
+++ b/Documentation/blame-options.txt
@@ -70,6 +70,14 @@ of lines before or after the line given by <start>.
 	tree copy has the contents of the named file (specify
 	`-` to make the command read from the standard input).
 
+--date <format>::
+	The value is one of the following alternatives:
+	{relative,local,default,iso,rfc,short}. If --date is not
+	provided, the value of the blame.date config variable is
+	used. If the blame.date config variable is also not set, the
+	iso format is used. For more information, See the discussion
+	of the --date option at linkgit:git-log[1].
+
 -M|<num>|::
 	Detect moving lines in the file as well.  When a commit
 	moves a block of lines in a file (e.g. the original file
diff --git a/Documentation/config.txt b/Documentation/config.txt
index 4d42bff718..12540b605f 100644
--- a/Documentation/config.txt
+++ b/Documentation/config.txt
@@ -25,7 +25,7 @@ blank lines are ignored.
 The file consists of sections and variables.  A section begins with
 the name of the section in square brackets and continues until the next
 section begins.  Section names are not case sensitive.  Only alphanumeric
-characters, '`-`' and '`.`' are allowed in section names.  Each variable
+characters, `-` and `.` are allowed in section names.  Each variable
 must belong to some section, which means that there must be section
 header before first setting of a variable.
 
@@ -39,7 +39,7 @@ in the section header, like in example below:
 --------
 
 Subsection names can contain any characters except newline (doublequote
-'`"`' and backslash have to be escaped as '`\"`' and '`\\`',
+`"` and backslash have to be escaped as `\"` and `\\`,
 respectively) and are case sensitive.  Section header cannot span multiple
 lines.  Variables may belong directly to a section or to a given subsection.
 You can have `[section]` if you have `[section "subsection"]`, but you
@@ -53,7 +53,7 @@ All the other lines are recognized as setting variables, in the form
 'name = value'.  If there is no equal sign on the line, the entire line
 is taken as 'name' and the variable is recognized as boolean "true".
 The variable names are case-insensitive and only alphanumeric
-characters and '`-`' are allowed.  There can be more than one value
+characters and `-` are allowed.  There can be more than one value
 for a given variable; we say then that variable is multivalued.
 
 Leading and trailing whitespace in a variable value is discarded.
@@ -69,15 +69,15 @@ String values may be entirely or partially enclosed in double quotes.
 You need to enclose variable value in double quotes if you want to
 preserve leading or trailing whitespace, or if variable value contains
 beginning of comment characters (if it contains '#' or ';').
-Double quote '`"`' and backslash '`\`' characters in variable value must
-be escaped: use '`\"`' for '`"`' and '`\\`' for '`\`'.
+Double quote `"` and backslash `\` characters in variable value must
+be escaped: use `\"` for `"` and `\\` for `\`.
 
-The following escape sequences (beside '`\"`' and '`\\`') are recognized:
-'`\n`' for newline character (NL), '`\t`' for horizontal tabulation (HT, TAB)
-and '`\b`' for backspace (BS).  No other char escape sequence, nor octal
+The following escape sequences (beside `\"` and `\\`) are recognized:
+`\n` for newline character (NL), `\t` for horizontal tabulation (HT, TAB)
+and `\b` for backspace (BS).  No other char escape sequence, nor octal
 char sequences are valid.
 
-Variable value ending in a '`\`' is continued on the next line in the
+Variable value ending in a `\` is continued on the next line in the
 customary UNIX fashion.
 
 Some variables may require special value format.
@@ -221,6 +221,11 @@ core.gitProxy::
 Can be overridden by the 'GIT_PROXY_COMMAND' environment variable
 (which always applies universally, without the special "for"
 handling).
++
+The special string `none` can be used as the proxy command to
+specify that no proxy be used for a given domain pattern.
+This is useful for excluding servers inside a firewall from
+proxy use, while defaulting to a common proxy for external domains.
 
 core.ignoreStat::
 	If true, commands which modify both the working tree and the index
@@ -382,9 +387,9 @@ core.pager::
 	to override git's default settings this way, you need
 	to be explicit.  For example, to disable the S option
 	in a backward compatible manner, set `core.pager`
-	to "`less -+$LESS -FRX`".  This will be passed to the
+	to `less -+$LESS -FRX`.  This will be passed to the
 	shell by git, which will translate the final command to
-	"`LESS=FRSX less -+FRSX -FRX`".
+	`LESS=FRSX less -+FRSX -FRX`.
 
 core.whitespace::
 	A comma separated list of common whitespace problems to
@@ -696,6 +701,16 @@ format.pretty::
 	See linkgit:git-log[1], linkgit:git-show[1],
 	linkgit:git-whatchanged[1].
 
+format.thread::
+	The default threading style for 'git-format-patch'.  Can be
+	either a boolean value, `shallow` or `deep`.  'Shallow'
+	threading makes every mail a reply to the head of the series,
+	where the head is chosen from the cover letter, the
+	`\--in-reply-to`, and the first patch mail, in this order.
+	'Deep' threading makes every mail a reply to the previous one.
+	A true boolean value is the same as `shallow`, and a false
+	value disables threading.
+
 gc.aggressiveWindow::
 	The window size parameter used in the delta compression
 	algorithm used by 'git-gc --aggressive'.  This defaults
@@ -1170,7 +1185,7 @@ pager.<cmd>::
 	particular git subcommand when writing to a tty.  If
 	`\--paginate` or `\--no-pager` is specified on the command line,
 	it takes precedence over this option.  To disable pagination for
-	all commands, set `core.pager` or 'GIT_PAGER' to "`cat`".
+	all commands, set `core.pager` or `GIT_PAGER` to `cat`.
 
 pull.octopus::
 	The default merge strategy to use when pulling multiple branches
@@ -1179,6 +1194,10 @@ pull.octopus::
 pull.twohead::
 	The default merge strategy to use when pulling a single branch.
 
+rebase.stat::
+	Whether to show a diffstat of what changed upstream since the last
+	rebase. False by default.
+
 receive.fsckObjects::
 	If it is set to true, git-receive-pack will check all received
 	objects. It will abort in the case of a malformed object or a
diff --git a/Documentation/git-branch.txt b/Documentation/git-branch.txt
index 6103d62fe3..27b73bcf9e 100644
--- a/Documentation/git-branch.txt
+++ b/Documentation/git-branch.txt
@@ -76,8 +76,8 @@ OPTIONS
 	based sha1 expressions such as "<branchname>@\{yesterday}".
 
 -f::
-	Force the creation of a new branch even if it means deleting
-	a branch that already exists with the same name.
+	Reset <branchname> to <startpoint> if <branchname> exists
+	already. Without `-f` 'git-branch' refuses to change an existing branch.
 
 -m::
 	Move/rename a branch and the corresponding reflog.
diff --git a/Documentation/git-checkout.txt b/Documentation/git-checkout.txt
index 3bccffae62..1a6c19e5c3 100644
--- a/Documentation/git-checkout.txt
+++ b/Documentation/git-checkout.txt
@@ -8,7 +8,7 @@ git-checkout - Checkout a branch or paths to the working tree
 SYNOPSIS
 --------
 [verse]
-'git checkout' [-q] [-f] [--track | --no-track] [-b <new_branch> [-l]] [-m] [<branch>]
+'git checkout' [-q] [-f] [-t | --track | --no-track] [-b <new_branch> [-l]] [-m] [<branch>]
 'git checkout' [-f|--ours|--theirs|-m|--conflict=<style>] [<tree-ish>] [--] <paths>...
 
 DESCRIPTION
@@ -21,15 +21,15 @@ specified, <new_branch>.  Using -b will cause <new_branch> to
 be created; in this case you can use the --track or --no-track
 options, which will be passed to `git branch`.
 
-As a convenience, --track will default to create a branch whose
+As a convenience, --track will default to creating a branch whose
 name is constructed from the specified branch name by stripping
 the first namespace level.
 
 When <paths> are given, this command does *not* switch
 branches.  It updates the named paths in the working tree from
 the index file, or from a named <tree-ish> (most often a commit).  In
-this case, the `-b` options is meaningless and giving
-either of them results in an error.  <tree-ish> argument can be
+this case, the `-b` and `--track` options are meaningless and giving
+either of them results in an error. The <tree-ish> argument can be
 used to specify a specific tree-ish (i.e. commit, tag or tree)
 to update the index for the given paths before updating the
 working tree.
@@ -75,14 +75,13 @@ entries; instead, unmerged entries are ignored.
 	<repository> <refspec>" explicitly. This behavior is the default
 	when the start point is a remote branch. Set the
 	branch.autosetupmerge configuration variable to `false` if you want
-	'git-checkout' and 'git-branch' to always behave as if '--no-track' were
+	'git checkout' and 'git branch' to always behave as if '--no-track' were
 	given. Set it to `always` if you want this behavior when the
-	start-point is either a local or remote branch.
+	start point is either a local or remote branch.
 +
-If no '-b' option was given, the name of the new branch will be
-derived from the remote branch, by attempting to guess the name
-of the branch on remote system.  If "remotes/" or "refs/remotes/"
-are prefixed, it is stripped away, and then the part up to the
+If no '-b' option is given, the name of the new branch will be
+derived from the remote branch.  If "remotes/" or "refs/remotes/"
+is prefixed it is stripped away, and then the part up to the
 next slash (which would be the nickname of the remote) is removed.
 This would tell us to use "hack" as the local branch when branching
 off of "origin/hack" (or "remotes/origin/hack", or even
@@ -134,9 +133,9 @@ the conflicted merge in the specified paths.
 When this parameter names a non-branch (but still a valid commit object),
 your HEAD becomes 'detached'.
 +
-As a special case, the "`@\{-N\}`" syntax for the N-th last branch
+As a special case, the `"@\{-N\}"` syntax for the N-th last branch
 checks out the branch (instead of detaching).  You may also specify
-"`-`" which is synonymous with "`@\{-1\}`".
+`-` which is synonymous with `"@\{-1\}"`.
 
 
 Detached HEAD
@@ -152,12 +151,12 @@ $ git checkout v2.6.18
 ------------
 
 Earlier versions of git did not allow this and asked you to
-create a temporary branch using `-b` option, but starting from
+create a temporary branch using the `-b` option, but starting from
 version 1.5.0, the above command 'detaches' your HEAD from the
-current branch and directly point at the commit named by the tag
-(`v2.6.18` in the above example).
+current branch and directly points at the commit named by the tag
+(`v2.6.18` in the example above).
 
-You can use usual git commands while in this state.  You can use
+You can use all git commands while in this state.  You can use
 `git reset --hard $othercommit` to further move around, for
 example.  You can make changes and create a new commit on top of
 a detached HEAD.  You can even create a merge by using `git
@@ -191,7 +190,7 @@ $ git checkout hello.c            <3>
 ------------
 +
 <1> switch branch
-<2> take out a file out of other commit
+<2> take a file out of another commit
 <3> restore hello.c from HEAD of current branch
 +
 If you have an unfortunate branch that is named `hello.c`, this
@@ -202,7 +201,7 @@ You should instead write:
 $ git checkout -- hello.c
 ------------
 
-. After working in a wrong branch, switching to the correct
+. After working in the wrong branch, switching to the correct
 branch would be done using:
 +
 ------------
@@ -210,7 +209,7 @@ $ git checkout mytopic
 ------------
 +
 However, your "wrong" branch and correct "mytopic" branch may
-differ in files that you have locally modified, in which case,
+differ in files that you have modified locally, in which case
 the above checkout would fail like this:
 +
 ------------
diff --git a/Documentation/git-config.txt b/Documentation/git-config.txt
index 7d140073b1..82ce89eae8 100644
--- a/Documentation/git-config.txt
+++ b/Documentation/git-config.txt
@@ -131,6 +131,10 @@ See also <<FILES>>.
 	in the config file will cause the value to be multiplied
 	by 1024, 1048576, or 1073741824 prior to output.
 
+--bool-or-int::
+	'git-config' will ensure that the output matches the format of
+	either --bool or --int, as described above.
+
 -z::
 --null::
 	For all options that output values and/or keys, always
diff --git a/Documentation/git-filter-branch.txt b/Documentation/git-filter-branch.txt
index 7ffe03f427..237f85e767 100644
--- a/Documentation/git-filter-branch.txt
+++ b/Documentation/git-filter-branch.txt
@@ -91,7 +91,9 @@ OPTIONS
 --index-filter <command>::
 	This is the filter for rewriting the index.  It is similar to the
 	tree filter but does not check out the tree, which makes it much
-	faster.  For hairy cases, see linkgit:git-update-index[1].
+	faster.  Frequently used with `git rm \--cached
+	\--ignore-unmatch ...`, see EXAMPLES below.  For hairy
+	cases, see linkgit:git-update-index[1].
 
 --parent-filter <command>::
 	This is the filter for rewriting the commit's parent list.
@@ -204,19 +206,18 @@ However, if the file is absent from the tree of some commit,
 a simple `rm filename` will fail for that tree and commit.
 Thus you may instead want to use `rm -f filename` as the script.
 
-A significantly faster version:
+Using `\--index-filter` with 'git-rm' yields a significantly faster
+version.  Like with using `rm filename`, `git rm --cached filename`
+will fail if the file is absent from the tree of a commit.  If you
+want to "completely forget" a file, it does not matter when it entered
+history, so we also add `\--ignore-unmatch`:
 
 --------------------------------------------------------------------------
-git filter-branch --index-filter 'git rm --cached filename' HEAD
+git filter-branch --index-filter 'git rm --cached --ignore-unmatch filename' HEAD
 --------------------------------------------------------------------------
 
 Now, you will get the rewritten history saved in HEAD.
 
-As with using `rm filename`, `git rm --cached filename` will fail
-if the file is absent from the tree of a commit.  If it is not important
-whether the file is already absent from the tree, you can use
-`git rm --cached --ignore-unmatch filename` instead.
-
 To rewrite the repository to look as if `foodir/` had been its project
 root, and discard all other history:
 
diff --git a/Documentation/git-format-patch.txt b/Documentation/git-format-patch.txt
index e7ae8cf109..c14e3ee395 100644
--- a/Documentation/git-format-patch.txt
+++ b/Documentation/git-format-patch.txt
@@ -127,10 +127,18 @@ include::diff-options.txt[]
 	which is the commit message and the patch itself in the
 	second part, with "Content-Disposition: inline".
 
---thread::
+--thread[=<style>]::
 	Add In-Reply-To and References headers to make the second and
 	subsequent mails appear as replies to the first.  Also generates
 	the Message-Id header to reference.
++
+The optional <style> argument can be either `shallow` or `deep`.
+'Shallow' threading makes every mail a reply to the head of the
+series, where the head is chosen from the cover letter, the
+`\--in-reply-to`, and the first patch mail, in this order.  'Deep'
+threading makes every mail a reply to the previous one.  If not
+specified, defaults to the 'format.thread' configuration, or `shallow`
+if that is not set.
 
 --in-reply-to=Message-Id::
 	Make the first mail (or all the mails with --no-thread) appear as a
diff --git a/Documentation/git-merge.txt b/Documentation/git-merge.txt
index f7be5846a6..cc0d30fe7e 100644
--- a/Documentation/git-merge.txt
+++ b/Documentation/git-merge.txt
@@ -146,7 +146,7 @@ And here is another line that is cleanly resolved or unmodified.
 ------------
 
 The area where a pair of conflicting changes happened is marked with markers
-"`<<<<<<<`", "`=======`", and "`>>>>>>>`".  The part before the "`=======`"
+`<<<<<<<`, `=======`, and `>>>>>>>`.  The part before the `=======`
 is typically your side, and the part afterwards is typically their side.
 
 The default format does not show what the original said in the conflicting
@@ -173,8 +173,8 @@ Git makes conflict resolution easy.
 And here is another line that is cleanly resolved or unmodified.
 ------------
 
-In addition to the "`<<<<<<<`", "`=======`", and "`>>>>>>>`" markers, it uses
-another "`|||||||`" marker that is followed by the original text.  You can
+In addition to the `<<<<<<<`, `=======`, and `>>>>>>>` markers, it uses
+another `|||||||` marker that is followed by the original text.  You can
 tell that the original just stated a fact, and your side simply gave in to
 that statement and gave up, while the other side tried to have a more
 positive attitude.  You can sometimes come up with a better resolution by
diff --git a/Documentation/git-push.txt b/Documentation/git-push.txt
index 4e7e5a719a..fd53c49fb8 100644
--- a/Documentation/git-push.txt
+++ b/Documentation/git-push.txt
@@ -24,8 +24,8 @@ every time you push into it, by setting up 'hooks' there.  See
 documentation for linkgit:git-receive-pack[1].
 
 
-OPTIONS
--------
+OPTIONS[[OPTIONS]]
+------------------
 <repository>::
 	The "remote" repository that is destination of a push
 	operation.  This parameter can be either a URL
@@ -187,6 +187,28 @@ reason::
 Examples
 --------
 
+git push::
+	Works like `git push <remote>`, where <remote> is the
+	current branch's remote (or `origin`, if no remote is
+	configured for the current branch).
+
+git push origin::
+	Without additional configuration, works like
+	`git push origin :`.
++
+The default behavior of this command when no <refspec> is given can be
+configured by setting the `push` option of the remote.
++
+For example, to default to pushing only the current branch to `origin`
+use `git config remote.origin.push HEAD`.  Any valid <refspec> (like
+the ones in the examples below) can be configured as the default for
+`git push origin`.
+
+git push origin :::
+	Push "matching" branches to `origin`. See
+	<refspec> in the <<OPTIONS,OPTIONS>> section above for a
+	description of "matching" branches.
+
 git push origin master::
 	Find a ref that matches `master` in the source repository
 	(most likely, it would find `refs/heads/master`), and update
diff --git a/Documentation/git-rebase.txt b/Documentation/git-rebase.txt
index da3c38cd60..57bd333f0b 100644
--- a/Documentation/git-rebase.txt
+++ b/Documentation/git-rebase.txt
@@ -192,6 +192,13 @@ Alternatively, you can undo the 'git-rebase' with
 
     git rebase --abort
 
+CONFIGURATION
+-------------
+
+rebase.stat::
+	Whether to show a diffstat of what changed upstream since the last
+	rebase. False by default.
+
 OPTIONS
 -------
 <newbase>::
@@ -232,7 +239,15 @@ OPTIONS
 
 -v::
 --verbose::
-	Display a diffstat of what changed upstream since the last rebase.
+	Be verbose. Implies --stat.
+
+--stat::
+	Show a diffstat of what changed upstream since the last rebase. The
+	diffstat is also controlled by the configuration option rebase.stat.
+
+-n::
+--no-stat::
+	Do not show a diffstat as part of the rebase process.
 
 --no-verify::
 	This option bypasses the pre-rebase hook.  See also linkgit:githooks[5].
diff --git a/Documentation/git-remote.txt b/Documentation/git-remote.txt
index fad983e297..c9c0e6f932 100644
--- a/Documentation/git-remote.txt
+++ b/Documentation/git-remote.txt
@@ -13,6 +13,7 @@ SYNOPSIS
 'git remote add' [-t <branch>] [-m <master>] [-f] [--mirror] <name> <url>
 'git remote rename' <old> <new>
 'git remote rm' <name>
+'git remote set-head' <name> [-a | -d | <branch>]
 'git remote show' [-n] <name>
 'git remote prune' [-n | --dry-run] <name>
 'git remote update' [group]
@@ -53,8 +54,7 @@ is created.  You can give more than one `-t <branch>` to track
 multiple branches without grabbing all branches.
 +
 With `-m <master>` option, `$GIT_DIR/remotes/<name>/HEAD` is set
-up to point at remote's `<master>` branch instead of whatever
-branch the `HEAD` at the remote repository actually points at.
+up to point at remote's `<master>` branch. See also the set-head command.
 +
 In mirror mode, enabled with `\--mirror`, the refs will not be stored
 in the 'refs/remotes/' namespace, but in 'refs/heads/'.  This option
@@ -76,6 +76,30 @@ the configuration file format.
 Remove the remote named <name>. All remote tracking branches and
 configuration settings for the remote are removed.
 
+'set-head'::
+
+Sets or deletes the default branch (`$GIT_DIR/remotes/<name>/HEAD`) for
+the named remote. Having a default branch for a remote is not required,
+but allows the name of the remote to be specified in lieu of a specific
+branch. For example, if the default branch for `origin` is set to
+`master`, then `origin` may be specified wherever you would normally
+specify `origin/master`.
++
+With `-d`, `$GIT_DIR/remotes/<name>/HEAD` is deleted.
++
+With `-a`, the remote is queried to determine its `HEAD`, then
+`$GIT_DIR/remotes/<name>/HEAD` is set to the same branch. e.g., if the remote
+`HEAD` is pointed at `next`, "`git remote set-head origin -a`" will set
+`$GIT_DIR/refs/remotes/origin/HEAD` to `refs/remotes/origin/next`. This will
+only work if `refs/remotes/origin/next` already exists; if not it must be
+fetched first.
++
+Use `<branch>` to set `$GIT_DIR/remotes/<name>/HEAD` explicitly. e.g., "git
+remote set-head origin master" will set `$GIT_DIR/refs/remotes/origin/HEAD` to
+`refs/remotes/origin/master`. This will only work if
+`refs/remotes/origin/master` already exists; if not it must be fetched first.
++
+
 'show'::
 
 Gives some information about the remote <name>.
diff --git a/Documentation/git-rev-parse.txt b/Documentation/git-rev-parse.txt
index 3ccef2f2b3..5ed2bc840f 100644
--- a/Documentation/git-rev-parse.txt
+++ b/Documentation/git-rev-parse.txt
@@ -299,18 +299,18 @@ previous section means the set of commits reachable from that
 commit, following the commit ancestry chain.
 
 To exclude commits reachable from a commit, a prefix `{caret}`
-notation is used.  E.g. "`{caret}r1 r2`" means commits reachable
+notation is used.  E.g. `{caret}r1 r2` means commits reachable
 from `r2` but exclude the ones reachable from `r1`.
 
 This set operation appears so often that there is a shorthand
 for it.  When you have two commits `r1` and `r2` (named according
 to the syntax explained in SPECIFYING REVISIONS above), you can ask
 for commits that are reachable from r2 excluding those that are reachable
-from r1 by "`{caret}r1 r2`" and it can be written as "`r1..r2`".
+from r1 by `{caret}r1 r2` and it can be written as `r1..r2`.
 
-A similar notation "`r1\...r2`" is called symmetric difference
+A similar notation `r1\...r2` is called symmetric difference
 of `r1` and `r2` and is defined as
-"`r1 r2 --not $(git merge-base --all r1 r2)`".
+`r1 r2 --not $(git merge-base --all r1 r2)`.
 It is the set of commits that are reachable from either one of
 `r1` or `r2` but not from both.
 
diff --git a/Documentation/git-send-email.txt b/Documentation/git-send-email.txt
index 14dfb501eb..10dfd667b2 100644
--- a/Documentation/git-send-email.txt
+++ b/Documentation/git-send-email.txt
@@ -60,14 +60,13 @@ The --cc option must be repeated for each user you want on the cc list.
 	Use $GIT_EDITOR, core.editor, $VISUAL, or $EDITOR to edit an
 	introductory message for the patch series.
 +
-When '--compose' is used, git send-email gets less interactive will use the
-values of the headers you set there. If the body of the email (what you type
-after the headers and a blank line) only contains blank (or GIT: prefixed)
-lines, the summary won't be sent, but git-send-email will still use the
-Headers values if you don't removed them.
+When '--compose' is used, git send-email will use the From, Subject, and
+In-Reply-To headers specified in the message. If the body of the message
+(what you type after the headers and a blank line) only contains blank
+(or GIT: prefixed) lines the summary won't be sent, but From, Subject,
+and In-Reply-To headers will be used unless they are removed.
 +
-If it wasn't able to see a header in the summary it will ask you about it
-interactively after quitting your editor.
+Missing From or In-Reply-To headers will be prompted for.
 
 --from::
 	Specify the sender of the emails.  This will default to
diff --git a/Documentation/git.txt b/Documentation/git.txt
index 9a26bde73e..7513c57c6a 100644
--- a/Documentation/git.txt
+++ b/Documentation/git.txt
@@ -43,9 +43,10 @@ unreleased) version of git, that is available from 'master'
 branch of the `git.git` repository.
 Documentation for older releases are available here:
 
-* link:v1.6.2/git.html[documentation for release 1.6.2]
+* link:v1.6.2.1/git.html[documentation for release 1.6.2.1]
 
 * release notes for
+  link:RelNotes-1.6.2.1.txt[1.6.2.1],
   link:RelNotes-1.6.2.txt[1.6.2].
 
 * link:v1.6.1.3/git.html[documentation for release 1.6.1.3]
diff --git a/Documentation/gitcli.txt b/Documentation/gitcli.txt
index 29e5929db2..be39ed7c15 100644
--- a/Documentation/gitcli.txt
+++ b/Documentation/gitcli.txt
@@ -46,20 +46,20 @@ Here are the rules regarding the "flags" that you should follow when you are
 scripting git:
 
  * it's preferred to use the non dashed form of git commands, which means that
-   you should prefer `"git foo"` to `"git-foo"`.
+   you should prefer `git foo` to `git-foo`.
 
- * splitting short options to separate words (prefer `"git foo -a -b"`
-   to `"git foo -ab"`, the latter may not even work).
+ * splitting short options to separate words (prefer `git foo -a -b`
+   to `git foo -ab`, the latter may not even work).
 
  * when a command line option takes an argument, use the 'sticked' form.  In
-   other words, write `"git foo -oArg"` instead of `"git foo -o Arg"` for short
-   options, and `"git foo --long-opt=Arg"` instead of `"git foo --long-opt Arg"`
+   other words, write `git foo -oArg` instead of `git foo -o Arg` for short
+   options, and `git foo --long-opt=Arg` instead of `git foo --long-opt Arg`
    for long options.  An option that takes optional option-argument must be
    written in the 'sticked' form.
 
  * when you give a revision parameter to a command, make sure the parameter is
    not ambiguous with a name of a file in the work tree.  E.g. do not write
-   `"git log -1 HEAD"` but write `"git log -1 HEAD --"`; the former will not work
+   `git log -1 HEAD` but write `git log -1 HEAD --`; the former will not work
    if you happen to have a file called `HEAD` in the work tree.
 
 
@@ -99,17 +99,17 @@ usage: git-describe [options] <committish>*
 
 Negating options
 ~~~~~~~~~~~~~~~~
-Options with long option names can be negated by prefixing `"--no-"`. For
-example, `"git branch"` has the option `"--track"` which is 'on' by default. You
-can use `"--no-track"` to override that behaviour. The same goes for `"--color"`
-and `"--no-color"`.
+Options with long option names can be negated by prefixing `--no-`. For
+example, `git branch` has the option `--track` which is 'on' by default. You
+can use `--no-track` to override that behaviour. The same goes for `--color`
+and `--no-color`.
 
 
 Aggregating short options
 ~~~~~~~~~~~~~~~~~~~~~~~~~
 Commands that support the enhanced option parser allow you to aggregate short
-options. This means that you can for example use `"git rm -rf"` or
-`"git clean -fdx"`.
+options. This means that you can for example use `git rm -rf` or
+`git clean -fdx`.
 
 
 Separating argument from the option
diff --git a/Documentation/glossary-content.txt b/Documentation/glossary-content.txt
index 9afca755ed..4fc1cf1184 100644
--- a/Documentation/glossary-content.txt
+++ b/Documentation/glossary-content.txt
@@ -262,7 +262,7 @@ This commit is referred to as a "merge commit", or sometimes just a
 	'origin' is used for that purpose. New upstream updates
 	will be fetched into remote <<def_tracking_branch,tracking branches>> named
 	origin/name-of-upstream-branch, which you can see using
-	"`git branch -r`".
+	`git branch -r`.
 
 [[def_pack]]pack::
 	A set of objects which have been compressed into one file (to save space
diff --git a/Documentation/rev-list-options.txt b/Documentation/rev-list-options.txt
index 5076322877..7dd237c2f6 100644
--- a/Documentation/rev-list-options.txt
+++ b/Documentation/rev-list-options.txt
@@ -568,11 +568,11 @@ This outputs all the commit objects between the included and excluded
 commits, ordered by their distance to the included and excluded
 commits. The farthest from them is displayed first. (This is the only
 one displayed by `--bisect`.)
-
++
 This is useful because it makes it easy to choose a good commit to
 test when you want to avoid to test some of them for some reason (they
 may not compile for example).
-
++
 This option can be used along with `--bisect-vars`, in this case,
 after all the sorted commit objects, there will be the same text as if
 `--bisect-vars` had been used alone.
diff --git a/Documentation/technical/api-parse-options.txt b/Documentation/technical/api-parse-options.txt
index 539863b1f9..e66ca9f70c 100644
--- a/Documentation/technical/api-parse-options.txt
+++ b/Documentation/technical/api-parse-options.txt
@@ -66,6 +66,12 @@ Steps to parse options
 non-option arguments in `argv[]`.
 `argc` is updated appropriately because of the assignment.
 +
+You can also pass NULL instead of a usage array as fourth parameter of
+parse_options(), to avoid displaying a help screen with usage info and
+option list.  This should only be done if necessary, e.g. to implement
+a limited parser for only a subset of the options that needs to be run
+before the full parser, which in turn shows the full help message.
++
 Flags are the bitwise-or of:
 
 `PARSE_OPT_KEEP_DASHDASH`::
@@ -77,6 +83,28 @@ Flags are the bitwise-or of:
 	Using this flag, processing is stopped at the first non-option
 	argument.
 
+`PARSE_OPT_KEEP_ARGV0`::
+	Keep the first argument, which contains the program name.  It's
+	removed from argv[] by default.
+
+`PARSE_OPT_KEEP_UNKNOWN`::
+	Keep unknown arguments instead of erroring out.  This doesn't
+	work for all combinations of arguments as users might expect
+	it to do.  E.g. if the first argument in `--unknown --known`
+	takes a value (which we can't know), the second one is
+	mistakenly interpreted as a known option.  Similarly, if
+	`PARSE_OPT_STOP_AT_NON_OPTION` is set, the second argument in
+	`--unknown value` will be mistakenly interpreted as a
+	non-option, not as a value belonging to the unknown option,
+	the parser early.  That's why parse_options() errors out if
+	both options are set.
+
+`PARSE_OPT_NO_INTERNAL_HELP`::
+	By default, parse_options() handles `-h`, `--help` and
+	`--help-all` internally, by showing a help screen.  This option
+	turns it off and allows one to add custom handlers for these
+	options, or to just leave them unknown.
+
 Data Structure
 --------------
 
diff --git a/Documentation/user-manual.txt b/Documentation/user-manual.txt
index 96af8977f6..e33b29b1dd 100644
--- a/Documentation/user-manual.txt
+++ b/Documentation/user-manual.txt
@@ -1136,10 +1136,10 @@ Ignoring files
 A project will often generate files that you do 'not' want to track with git.
 This typically includes files generated by a build process or temporary
 backup files made by your editor. Of course, 'not' tracking files with git
-is just a matter of 'not' calling "`git-add`" on them. But it quickly becomes
+is just a matter of 'not' calling `git-add` on them. But it quickly becomes
 annoying to have these untracked files lying around; e.g. they make
-"`git add .`" practically useless, and they keep showing up in the output of
-"`git status`".
+`git add .` practically useless, and they keep showing up in the output of
+`git status`.
 
 You can tell git to ignore certain files by creating a file called .gitignore
 in the top level of your working directory, with contents such as:
diff --git a/Makefile b/Makefile
index 0675c43e73..b96c2b316f 100644
--- a/Makefile
+++ b/Makefile
@@ -126,6 +126,12 @@ all::
 # randomly break unless your underlying filesystem supports those sub-second
 # times (my ext3 doesn't).
 #
+# Define USE_ST_TIMESPEC if your "struct stat" uses "st_ctimespec" instead of
+# "st_ctim"
+#
+# Define NO_NSEC if your "struct stat" does not have "st_ctim.tv_nsec"
+# available.  This automatically turns USE_NSEC off.
+#
 # Define USE_STDEV below if you want git to care about the underlying device
 # change being considered an inode change from the update-index perspective.
 #
@@ -657,6 +663,7 @@ ifeq ($(uname_S),Darwin)
 	endif
 	NO_MEMMEM = YesPlease
 	THREADED_DELTA_SEARCH = YesPlease
+	USE_ST_TIMESPEC = YesPlease
 endif
 ifeq ($(uname_S),SunOS)
 	NEEDS_SOCKET = YesPlease
@@ -734,6 +741,7 @@ ifeq ($(uname_S),AIX)
 	NO_MEMMEM = YesPlease
 	NO_MKDTEMP = YesPlease
 	NO_STRLCPY = YesPlease
+	NO_NSEC = YesPlease
 	FREAD_READS_DIRECTORIES = UnfortunatelyYes
 	INTERNAL_QSORT = UnfortunatelyYes
 	NEEDS_LIBICONV=YesPlease
@@ -799,6 +807,7 @@ ifneq (,$(findstring MINGW,$(uname_S)))
 	RUNTIME_PREFIX = YesPlease
 	NO_POSIX_ONLY_PROGRAMS = YesPlease
 	NO_ST_BLOCKS_IN_STRUCT_STAT = YesPlease
+	NO_NSEC = YesPlease
 	COMPAT_CFLAGS += -D__USE_MINGW_ACCESS -DNOGDI -Icompat -Icompat/regex -Icompat/fnmatch
 	COMPAT_CFLAGS += -DSNPRINTF_SIZE_CORR=1
 	COMPAT_CFLAGS += -DSTRIP_EXTENSION=\".exe\"
@@ -920,6 +929,15 @@ endif
 ifdef NO_ST_BLOCKS_IN_STRUCT_STAT
 	BASIC_CFLAGS += -DNO_ST_BLOCKS_IN_STRUCT_STAT
 endif
+ifdef USE_NSEC
+	BASIC_CFLAGS += -DUSE_NSEC
+endif
+ifdef USE_ST_TIMESPEC
+	BASIC_CFLAGS += -DUSE_ST_TIMESPEC
+endif
+ifdef NO_NSEC
+	BASIC_CFLAGS += -DNO_NSEC
+endif
 ifdef NO_C99_FORMAT
 	BASIC_CFLAGS += -DNO_C99_FORMAT
 endif
@@ -1363,6 +1381,7 @@ GIT-CFLAGS: .FORCE-GIT-CFLAGS
 GIT-BUILD-OPTIONS: .FORCE-GIT-BUILD-OPTIONS
 	@echo SHELL_PATH=\''$(subst ','\'',$(SHELL_PATH_SQ))'\' >$@
 	@echo TAR=\''$(subst ','\'',$(subst ','\'',$(TAR)))'\' >>$@
+	@echo NO_CURL=\''$(subst ','\'',$(subst ','\'',$(NO_CURL)))'\' >>$@
 
 ### Detect Tck/Tk interpreter path changes
 ifndef NO_TCLTK
@@ -1640,3 +1659,27 @@ check-docs::
 check-builtins::
 	./check-builtins.sh
 
+### Test suite coverage testing
+#
+.PHONY: coverage coverage-clean coverage-build coverage-report
+
+coverage:
+	$(MAKE) coverage-build
+	$(MAKE) coverage-report
+
+coverage-clean:
+	rm -f *.gcda *.gcno
+
+COVERAGE_CFLAGS = $(CFLAGS) -O0 -ftest-coverage -fprofile-arcs
+COVERAGE_LDFLAGS = $(CFLAGS)  -O0 -lgcov
+
+coverage-build: coverage-clean
+	$(MAKE) CFLAGS="$(COVERAGE_CFLAGS)" LDFLAGS="$(COVERAGE_LDFLAGS)" all
+	$(MAKE) CFLAGS="$(COVERAGE_CFLAGS)" LDFLAGS="$(COVERAGE_LDFLAGS)" \
+		-j1 test
+
+coverage-report:
+	gcov -b *.c
+	grep '^function.*called 0 ' *.c.gcov \
+		| sed -e 's/\([^:]*\)\.gcov: *function \([^ ]*\) called.*/\1: \2/' \
+		| tee coverage-untested-functions
diff --git a/archive.c b/archive.c
index c6aea8358f..96b62d4309 100644
--- a/archive.c
+++ b/archive.c
@@ -239,19 +239,6 @@ static void parse_treeish_arg(const char **argv,
 	ar_args->time = archive_time;
 }
 
-static void create_output_file(const char *output_file)
-{
-	int output_fd = open(output_file, O_CREAT | O_WRONLY | O_TRUNC, 0666);
-	if (output_fd < 0)
-		die("could not create archive file: %s ", output_file);
-	if (output_fd != 1) {
-		if (dup2(output_fd, 1) < 0)
-			die("could not redirect output");
-		else
-			close(output_fd);
-	}
-}
-
 #define OPT__COMPR(s, v, h, p) \
 	{ OPTION_SET_INT, (s), NULL, (v), NULL, (h), \
 	  PARSE_OPT_NOARG | PARSE_OPT_NONEG, NULL, (p) }
@@ -306,13 +293,12 @@ static int parse_archive_args(int argc, const char **argv,
 		die("Unexpected option --remote");
 	if (exec)
 		die("Option --exec can only be used together with --remote");
+	if (output)
+		die("Unexpected option --output");
 
 	if (!base)
 		base = "";
 
-	if (output)
-		create_output_file(output);
-
 	if (list) {
 		for (i = 0; i < ARRAY_SIZE(archivers); i++)
 			printf("%s\n", archivers[i].name);
diff --git a/builtin-add.c b/builtin-add.c
index 08443f2f1e..7ddb65932d 100644
--- a/builtin-add.c
+++ b/builtin-add.c
@@ -148,7 +148,7 @@ static const char **validate_pathspec(int argc, const char **argv, const char *p
 	if (pathspec) {
 		const char **p;
 		for (p = pathspec; *p; p++) {
-			if (has_symlink_leading_path(strlen(*p), *p)) {
+			if (has_symlink_leading_path(*p, strlen(*p))) {
 				int len = prefix ? strlen(prefix) : 0;
 				die("'%s' is beyond a symbolic link", *p + len);
 			}
diff --git a/builtin-apply.c b/builtin-apply.c
index f312798af3..106be94105 100644
--- a/builtin-apply.c
+++ b/builtin-apply.c
@@ -2360,7 +2360,7 @@ static int check_to_create_blob(const char *new_name, int ok_if_exists)
 		 * In such a case, path "new_name" does not exist as
 		 * far as git is concerned.
 		 */
-		if (has_symlink_leading_path(strlen(new_name), new_name))
+		if (has_symlink_leading_path(new_name, strlen(new_name)))
 			return 0;
 
 		return error("%s: already exists in working directory", new_name);
diff --git a/builtin-archive.c b/builtin-archive.c
index 5ceec433fd..60adef9363 100644
--- a/builtin-archive.c
+++ b/builtin-archive.c
@@ -5,44 +5,35 @@
 #include "cache.h"
 #include "builtin.h"
 #include "archive.h"
+#include "parse-options.h"
 #include "pkt-line.h"
 #include "sideband.h"
 
-static int run_remote_archiver(const char *remote, int argc,
-			       const char **argv)
+static void create_output_file(const char *output_file)
+{
+	int output_fd = open(output_file, O_CREAT | O_WRONLY | O_TRUNC, 0666);
+	if (output_fd < 0)
+		die("could not create archive file: %s ", output_file);
+	if (output_fd != 1) {
+		if (dup2(output_fd, 1) < 0)
+			die("could not redirect output");
+		else
+			close(output_fd);
+	}
+}
+
+static int run_remote_archiver(int argc, const char **argv,
+			       const char *remote, const char *exec)
 {
 	char *url, buf[LARGE_PACKET_MAX];
 	int fd[2], i, len, rv;
 	struct child_process *conn;
-	const char *exec = "git-upload-archive";
-	int exec_at = 0, exec_value_at = 0;
-
-	for (i = 1; i < argc; i++) {
-		const char *arg = argv[i];
-		if (!prefixcmp(arg, "--exec=")) {
-			if (exec_at)
-				die("multiple --exec specified");
-			exec = arg + 7;
-			exec_at = i;
-		} else if (!strcmp(arg, "--exec")) {
-			if (exec_at)
-				die("multiple --exec specified");
-			if (i + 1 >= argc)
-				die("option --exec requires a value");
-			exec = argv[i + 1];
-			exec_at = i;
-			exec_value_at = ++i;
-		}
-	}
 
 	url = xstrdup(remote);
 	conn = git_connect(fd, url, exec, 0);
 
-	for (i = 1; i < argc; i++) {
-		if (i == exec_at || i == exec_value_at)
-			continue;
+	for (i = 1; i < argc; i++)
 		packet_write(fd[1], "argument %s\n", argv[i]);
-	}
 	packet_flush(fd[1]);
 
 	len = packet_read_line(fd[0], buf, sizeof(buf));
@@ -69,51 +60,33 @@ static int run_remote_archiver(const char *remote, int argc,
 	return !!rv;
 }
 
-static const char *extract_remote_arg(int *ac, const char **av)
-{
-	int ix, iy, cnt = *ac;
-	int no_more_options = 0;
-	const char *remote = NULL;
-
-	for (ix = iy = 1; ix < cnt; ix++) {
-		const char *arg = av[ix];
-		if (!strcmp(arg, "--"))
-			no_more_options = 1;
-		if (!no_more_options) {
-			if (!prefixcmp(arg, "--remote=")) {
-				if (remote)
-					die("Multiple --remote specified");
-				remote = arg + 9;
-				continue;
-			} else if (!strcmp(arg, "--remote")) {
-				if (remote)
-					die("Multiple --remote specified");
-				if (++ix >= cnt)
-					die("option --remote requires a value");
-				remote = av[ix];
-				continue;
-			}
-			if (arg[0] != '-')
-				no_more_options = 1;
-		}
-		if (ix != iy)
-			av[iy] = arg;
-		iy++;
-	}
-	if (remote) {
-		av[--cnt] = NULL;
-		*ac = cnt;
-	}
-	return remote;
-}
+#define PARSE_OPT_KEEP_ALL ( PARSE_OPT_KEEP_DASHDASH | 	\
+			     PARSE_OPT_KEEP_ARGV0 | 	\
+			     PARSE_OPT_KEEP_UNKNOWN |	\
+			     PARSE_OPT_NO_INTERNAL_HELP	)
 
 int cmd_archive(int argc, const char **argv, const char *prefix)
 {
+	const char *exec = "git-upload-archive";
+	const char *output = NULL;
 	const char *remote = NULL;
+	struct option local_opts[] = {
+		OPT_STRING(0, "output", &output, "file",
+			"write the archive to this file"),
+		OPT_STRING(0, "remote", &remote, "repo",
+			"retrieve the archive from remote repository <repo>"),
+		OPT_STRING(0, "exec", &exec, "cmd",
+			"path to the remote git-upload-archive command"),
+		OPT_END()
+	};
+
+	argc = parse_options(argc, argv, local_opts, NULL, PARSE_OPT_KEEP_ALL);
+
+	if (output)
+		create_output_file(output);
 
-	remote = extract_remote_arg(&argc, argv);
 	if (remote)
-		return run_remote_archiver(remote, argc, argv);
+		return run_remote_archiver(argc, argv, remote, exec);
 
 	setvbuf(stderr, NULL, _IOLBF, BUFSIZ);
 
diff --git a/builtin-blame.c b/builtin-blame.c
index 971126a80d..2aedd17c39 100644
--- a/builtin-blame.c
+++ b/builtin-blame.c
@@ -1,5 +1,5 @@
 /*
- * Pickaxe
+ * Blame
  *
  * Copyright (c) 2006, Junio C Hamano
  */
@@ -40,6 +40,10 @@ static int reverse;
 static int blank_boundary;
 static int incremental;
 static int xdl_opts = XDF_NEED_MINIMAL;
+
+static enum date_mode blame_date_mode = DATE_ISO8601;
+static size_t blame_date_width;
+
 static struct string_list mailmap;
 
 #ifndef DEBUG
@@ -1532,24 +1536,20 @@ static const char *format_time(unsigned long time, const char *tz_str,
 			       int show_raw_time)
 {
 	static char time_buf[128];
-	time_t t = time;
-	int minutes, tz;
-	struct tm *tm;
+	const char *time_str;
+	int time_len;
+	int tz;
 
 	if (show_raw_time) {
 		sprintf(time_buf, "%lu %s", time, tz_str);
-		return time_buf;
 	}
-
-	tz = atoi(tz_str);
-	minutes = tz < 0 ? -tz : tz;
-	minutes = (minutes / 100)*60 + (minutes % 100);
-	minutes = tz < 0 ? -minutes : minutes;
-	t = time + minutes * 60;
-	tm = gmtime(&t);
-
-	strftime(time_buf, sizeof(time_buf), "%Y-%m-%d %H:%M:%S ", tm);
-	strcat(time_buf, tz_str);
+	else {
+		tz = atoi(tz_str);
+		time_str = show_date(time, tz, blame_date_mode);
+		time_len = strlen(time_str);
+		memcpy(time_buf, time_str, time_len);
+		memset(time_buf + time_len, ' ', blame_date_width - time_len);
+	}
 	return time_buf;
 }
 
@@ -1954,6 +1954,12 @@ static int git_blame_config(const char *var, const char *value, void *cb)
 		blank_boundary = git_config_bool(var, value);
 		return 0;
 	}
+	if (!strcmp(var, "blame.date")) {
+		if (!value)
+			return config_error_nonbool(var);
+		blame_date_mode = parse_date_format(value);
+		return 0;
+	}
 	return git_default_config(var, value, cb);
 }
 
@@ -2218,6 +2224,8 @@ int cmd_blame(int argc, const char **argv, const char *prefix)
 
 	git_config(git_blame_config, NULL);
 	init_revisions(&revs, NULL);
+	revs.date_mode = blame_date_mode;
+
 	save_commit_buffer = 0;
 	dashdash_pos = 0;
 
@@ -2242,8 +2250,35 @@ int cmd_blame(int argc, const char **argv, const char *prefix)
 parse_done:
 	argc = parse_options_end(&ctx);
 
-	if (cmd_is_annotate)
+	if (cmd_is_annotate) {
 		output_option |= OUTPUT_ANNOTATE_COMPAT;
+		blame_date_mode = DATE_ISO8601;
+	} else {
+		blame_date_mode = revs.date_mode;
+	}
+
+	/* The maximum width used to show the dates */
+	switch (blame_date_mode) {
+	case DATE_RFC2822:
+		blame_date_width = sizeof("Thu, 19 Oct 2006 16:00:04 -0700");
+		break;
+	case DATE_ISO8601:
+		blame_date_width = sizeof("2006-10-19 16:00:04 -0700");
+		break;
+	case DATE_RAW:
+		blame_date_width = sizeof("1161298804 -0700");
+		break;
+	case DATE_SHORT:
+		blame_date_width = sizeof("2006-10-19");
+		break;
+	case DATE_RELATIVE:
+		/* "normal" is used as the fallback for "relative" */
+	case DATE_LOCAL:
+	case DATE_NORMAL:
+		blame_date_width = sizeof("Thu Oct 19 16:00:04 2006 -0700");
+		break;
+	}
+	blame_date_width -= 1; /* strip the null */
 
 	if (DIFF_OPT_TST(&revs.diffopt, FIND_COPIES_HARDER))
 		opt |= (PICKAXE_BLAME_COPY | PICKAXE_BLAME_MOVE |
diff --git a/builtin-clone.c b/builtin-clone.c
index c338910b1c..efbc804a3d 100644
--- a/builtin-clone.c
+++ b/builtin-clone.c
@@ -20,6 +20,8 @@
 #include "dir.h"
 #include "pack-refs.h"
 #include "sigchain.h"
+#include "remote.h"
+#include "run-command.h"
 
 /*
  * Overall FIXMEs:
@@ -293,43 +295,6 @@ static void remove_junk_on_signal(int signo)
 	raise(signo);
 }
 
-static const struct ref *locate_head(const struct ref *refs,
-				     const struct ref *mapped_refs,
-				     const struct ref **remote_head_p)
-{
-	const struct ref *remote_head = NULL;
-	const struct ref *remote_master = NULL;
-	const struct ref *r;
-	for (r = refs; r; r = r->next)
-		if (!strcmp(r->name, "HEAD"))
-			remote_head = r;
-
-	for (r = mapped_refs; r; r = r->next)
-		if (!strcmp(r->name, "refs/heads/master"))
-			remote_master = r;
-
-	if (remote_head_p)
-		*remote_head_p = remote_head;
-
-	/* If there's no HEAD value at all, never mind. */
-	if (!remote_head)
-		return NULL;
-
-	/* If refs/heads/master could be right, it is. */
-	if (remote_master && !hashcmp(remote_master->old_sha1,
-				      remote_head->old_sha1))
-		return remote_master;
-
-	/* Look for another ref that points there */
-	for (r = mapped_refs; r; r = r->next)
-		if (r != remote_head &&
-		    !hashcmp(r->old_sha1, remote_head->old_sha1))
-			return r;
-
-	/* Nothing is the same */
-	return NULL;
-}
-
 static struct ref *write_remote_refs(const struct ref *refs,
 		struct refspec *refspec, const char *reflog)
 {
@@ -365,8 +330,6 @@ static void install_branch_config(const char *local,
 
 int cmd_clone(int argc, const char **argv, const char *prefix)
 {
-	int use_local_hardlinks = 1;
-	int use_separate_remote = 1;
 	int is_bundle = 0;
 	struct stat buf;
 	const char *repo_name, *repo, *work_tree, *git_dir;
@@ -377,6 +340,7 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	struct strbuf branch_top = STRBUF_INIT, reflog_msg = STRBUF_INIT;
 	struct transport *transport = NULL;
 	char *src_ref_prefix = "refs/heads/";
+	int err = 0;
 
 	struct refspec refspec;
 
@@ -388,9 +352,6 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	if (argc == 0)
 		die("You must specify a repository to clone.");
 
-	if (option_no_hardlinks)
-		use_local_hardlinks = 0;
-
 	if (option_mirror)
 		option_bare = 1;
 
@@ -399,7 +360,6 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 			die("--bare and --origin %s options are incompatible.",
 			    option_origin);
 		option_no_checkout = 1;
-		use_separate_remote = 0;
 	}
 
 	if (!option_origin)
@@ -545,7 +505,8 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 
 		mapped_refs = write_remote_refs(refs, &refspec, reflog_msg.buf);
 
-		head_points_at = locate_head(refs, mapped_refs, &remote_head);
+		remote_head = find_ref_by_name(refs, "HEAD");
+		head_points_at = guess_remote_head(remote_head, mapped_refs, 0);
 	}
 	else {
 		warning("You appear to have cloned an empty repository.");
@@ -631,6 +592,9 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		if (write_cache(fd, active_cache, active_nr) ||
 		    commit_locked_index(lock_file))
 			die("unable to write new index file");
+
+		err |= run_hook(NULL, "post-checkout", sha1_to_hex(null_sha1),
+				sha1_to_hex(remote_head->old_sha1), "1", NULL);
 	}
 
 	strbuf_release(&reflog_msg);
@@ -638,5 +602,5 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	strbuf_release(&key);
 	strbuf_release(&value);
 	junk_pid = 0;
-	return 0;
+	return err;
 }
diff --git a/builtin-count-objects.c b/builtin-count-objects.c
index 62fd1f0961..b814fe5070 100644
--- a/builtin-count-objects.c
+++ b/builtin-count-objects.c
@@ -60,7 +60,7 @@ static void count_objects(DIR *d, char *path, int len, int verbose,
 		hex[40] = 0;
 		if (get_sha1_hex(hex, sha1))
 			die("internal error");
-		if (has_sha1_pack(sha1, NULL))
+		if (has_sha1_pack(sha1))
 			(*packed_loose)++;
 	}
 }
diff --git a/builtin-diff-tree.c b/builtin-diff-tree.c
index 8ecefd4f0f..79cedb72c4 100644
--- a/builtin-diff-tree.c
+++ b/builtin-diff-tree.c
@@ -102,7 +102,6 @@ int cmd_diff_tree(int argc, const char **argv, const char *prefix)
 
 	init_revisions(opt, prefix);
 	git_config(git_diff_basic_config, NULL); /* no "diff" UI options */
-	nr_sha1 = 0;
 	opt->abbrev = 0;
 	opt->diff = 1;
 	argc = setup_revisions(argc, argv, opt, NULL);
diff --git a/builtin-fetch-pack.c b/builtin-fetch-pack.c
index 67fb80ec48..29f4315e92 100644
--- a/builtin-fetch-pack.c
+++ b/builtin-fetch-pack.c
@@ -216,9 +216,8 @@ static int find_common(int fd[2], unsigned char *result_sha1,
 	if (args.depth > 0) {
 		char line[1024];
 		unsigned char sha1[20];
-		int len;
 
-		while ((len = packet_read_line(fd[0], line, sizeof(line)))) {
+		while (packet_read_line(fd[0], line, sizeof(line))) {
 			if (!prefixcmp(line, "shallow ")) {
 				if (get_sha1_hex(line + 8, sha1))
 					die("invalid shallow line: %s", line);
@@ -801,15 +800,13 @@ struct ref *fetch_pack(struct fetch_pack_args *my_args,
 		int fd;
 
 		mtime.sec = st.st_mtime;
-#ifdef USE_NSEC
-		mtime.usec = st.st_mtim.usec;
-#endif
+		mtime.nsec = ST_MTIME_NSEC(st);
 		if (stat(shallow, &st)) {
 			if (mtime.sec)
 				die("shallow file was removed during fetch");
 		} else if (st.st_mtime != mtime.sec
 #ifdef USE_NSEC
-				|| st.st_mtim.usec != mtime.usec
+				|| ST_MTIME_NSEC(st) != mtime.nsec
 #endif
 			  )
 			die("shallow file was changed during fetch");
diff --git a/builtin-fmt-merge-msg.c b/builtin-fmt-merge-msg.c
index df18f4070f..a7883690d7 100644
--- a/builtin-fmt-merge-msg.c
+++ b/builtin-fmt-merge-msg.c
@@ -256,8 +256,7 @@ static void shortlog(const char *name, unsigned char *sha1,
 
 int fmt_merge_msg(int merge_summary, struct strbuf *in, struct strbuf *out) {
 	int limit = 20, i = 0, pos = 0;
-	char line[1024];
-	char *p = line, *sep = "";
+	char *sep = "";
 	unsigned char head_sha1[20];
 	const char *current_branch;
 
@@ -271,9 +270,8 @@ int fmt_merge_msg(int merge_summary, struct strbuf *in, struct strbuf *out) {
 	/* get a line */
 	while (pos < in->len) {
 		int len;
-		char *newline;
+		char *newline, *p = in->buf + pos;
 
-		p = in->buf + pos;
 		newline = strchr(p, '\n');
 		len = newline ? newline - p : strlen(p);
 		pos += len + !!newline;
diff --git a/builtin-for-each-ref.c b/builtin-for-each-ref.c
index e46b7adc97..5cbb4b081d 100644
--- a/builtin-for-each-ref.c
+++ b/builtin-for-each-ref.c
@@ -943,7 +943,6 @@ static int opt_parse_sort(const struct option *opt, const char *arg, int unset)
 		return -1;
 
 	*sort_tail = s = xcalloc(1, sizeof(*s));
-	sort_tail = &s->next;
 
 	if (*arg == '-') {
 		s->reverse = 1;
diff --git a/builtin-fsck.c b/builtin-fsck.c
index 64dffa5421..6436bc2248 100644
--- a/builtin-fsck.c
+++ b/builtin-fsck.c
@@ -160,7 +160,7 @@ static void check_reachable_object(struct object *obj)
 	 * do a full fsck
 	 */
 	if (!obj->parsed) {
-		if (has_sha1_pack(obj->sha1, NULL))
+		if (has_sha1_pack(obj->sha1))
 			return; /* it is in pack - forget about it */
 		printf("missing %s %s\n", typename(obj->type), sha1_to_hex(obj->sha1));
 		errors_found |= ERROR_REACHABLE;
diff --git a/builtin-log.c b/builtin-log.c
index 8549028817..8684fcdb67 100644
--- a/builtin-log.c
+++ b/builtin-log.c
@@ -17,6 +17,7 @@
 #include "run-command.h"
 #include "shortlog.h"
 #include "remote.h"
+#include "string-list.h"
 
 /* Set a default date-time format for git log ("log.date" config variable) */
 static const char *default_date_mode = NULL;
@@ -461,6 +462,10 @@ static void add_header(const char *value)
 	extra_hdr[extra_hdr_nr++] = xstrndup(value, len);
 }
 
+#define THREAD_SHALLOW 1
+#define THREAD_DEEP 2
+static int thread = 0;
+
 static int git_format_config(const char *var, const char *value, void *cb)
 {
 	if (!strcmp(var, "format.headers")) {
@@ -497,7 +502,18 @@ static int git_format_config(const char *var, const char *value, void *cb)
 			default_attach = xstrdup(git_version_string);
 		return 0;
 	}
-
+	if (!strcmp(var, "format.thread")) {
+		if (value && !strcasecmp(value, "deep")) {
+			thread = THREAD_DEEP;
+			return 0;
+		}
+		if (value && !strcasecmp(value, "shallow")) {
+			thread = THREAD_SHALLOW;
+			return 0;
+		}
+		thread = git_config_bool(var, value) && THREAD_SHALLOW;
+		return 0;
+	}
 
 	return git_log_config(var, value, cb);
 }
@@ -776,7 +792,6 @@ int cmd_format_patch(int argc, const char **argv, const char *prefix)
 	int numbered_files = 0;		/* _just_ numbers */
 	int subject_prefix = 0;
 	int ignore_if_in_upstream = 0;
-	int thread = 0;
 	int cover_letter = 0;
 	int boundary_count = 0;
 	int no_binary_diff = 0;
@@ -878,8 +893,13 @@ int cmd_format_patch(int argc, const char **argv, const char *prefix)
 		}
 		else if (!strcmp(argv[i], "--ignore-if-in-upstream"))
 			ignore_if_in_upstream = 1;
-		else if (!strcmp(argv[i], "--thread"))
-			thread = 1;
+		else if (!strcmp(argv[i], "--thread")
+			|| !strcmp(argv[i], "--thread=shallow"))
+			thread = THREAD_SHALLOW;
+		else if (!strcmp(argv[i], "--thread=deep"))
+			thread = THREAD_DEEP;
+		else if (!strcmp(argv[i], "--no-thread"))
+			thread = 0;
 		else if (!prefixcmp(argv[i], "--in-reply-to="))
 			in_reply_to = argv[i] + 14;
 		else if (!strcmp(argv[i], "--in-reply-to")) {
@@ -1030,8 +1050,12 @@ int cmd_format_patch(int argc, const char **argv, const char *prefix)
 		numbered = 1;
 	if (numbered)
 		rev.total = total + start_number - 1;
-	if (in_reply_to)
-		rev.ref_message_id = clean_message_id(in_reply_to);
+	if (in_reply_to || thread || cover_letter)
+		rev.ref_message_ids = xcalloc(1, sizeof(struct string_list));
+	if (in_reply_to) {
+		const char *msgid = clean_message_id(in_reply_to);
+		string_list_append(msgid, rev.ref_message_ids);
+	}
 	if (cover_letter) {
 		if (thread)
 			gen_message_id(&rev, "cover");
@@ -1050,15 +1074,33 @@ int cmd_format_patch(int argc, const char **argv, const char *prefix)
 			/* Have we already had a message ID? */
 			if (rev.message_id) {
 				/*
-				 * If we've got the ID to be a reply
-				 * to, discard the current ID;
-				 * otherwise, make everything a reply
-				 * to that.
+				 * For deep threading: make every mail
+				 * a reply to the previous one, no
+				 * matter what other options are set.
+				 *
+				 * For shallow threading:
+				 *
+				 * Without --cover-letter and
+				 * --in-reply-to, make every mail a
+				 * reply to the one before.
+				 *
+				 * With --in-reply-to but no
+				 * --cover-letter, make every mail a
+				 * reply to the <reply-to>.
+				 *
+				 * With --cover-letter, make every
+				 * mail but the cover letter a reply
+				 * to the cover letter.  The cover
+				 * letter is a reply to the
+				 * --in-reply-to, if specified.
 				 */
-				if (rev.ref_message_id)
+				if (thread == THREAD_SHALLOW
+				    && rev.ref_message_ids->nr > 0
+				    && (!cover_letter || rev.nr > 1))
 					free(rev.message_id);
 				else
-					rev.ref_message_id = rev.message_id;
+					string_list_append(rev.message_id,
+							   rev.ref_message_ids);
 			}
 			gen_message_id(&rev, sha1_to_hex(commit->object.sha1));
 		}
diff --git a/builtin-ls-files.c b/builtin-ls-files.c
index 9dec282fba..ca6f33d046 100644
--- a/builtin-ls-files.c
+++ b/builtin-ls-files.c
@@ -419,6 +419,7 @@ int cmd_ls_files(int argc, const char **argv, const char *prefix)
 		}
 		if (!strcmp(arg, "-d") || !strcmp(arg, "--deleted")) {
 			show_deleted = 1;
+			require_work_tree = 1;
 			continue;
 		}
 		if (!strcmp(arg, "-m") || !strcmp(arg, "--modified")) {
diff --git a/builtin-mailinfo.c b/builtin-mailinfo.c
index 2789ccdf7d..1eeeb4de6d 100644
--- a/builtin-mailinfo.c
+++ b/builtin-mailinfo.c
@@ -537,7 +537,6 @@ static int decode_header_bq(struct strbuf *it)
 				 */
 				strbuf_add(&outbuf, in, ep - in);
 			}
-			in = ep;
 		}
 		/* E.g.
 		 * ep : "=?iso-2022-jp?B?GyR...?= foo"
diff --git a/builtin-pack-objects.c b/builtin-pack-objects.c
index bcefa52c69..1c6d2c498b 100644
--- a/builtin-pack-objects.c
+++ b/builtin-pack-objects.c
@@ -1966,11 +1966,7 @@ static void add_objects_in_unpacked_packs(struct rev_info *revs)
 		const unsigned char *sha1;
 		struct object *o;
 
-		for (i = 0; i < revs->num_ignore_packed; i++) {
-			if (matches_pack_name(p, revs->ignore_packed[i]))
-				break;
-		}
-		if (revs->num_ignore_packed <= i)
+		if (p->pack_keep)
 			continue;
 		if (open_pack_index(p))
 			die("cannot open pack index");
@@ -2006,11 +2002,7 @@ static void loosen_unused_packed_objects(struct rev_info *revs)
 	const unsigned char *sha1;
 
 	for (p = packed_git; p; p = p->next) {
-		for (i = 0; i < revs->num_ignore_packed; i++) {
-			if (matches_pack_name(p, revs->ignore_packed[i]))
-				break;
-		}
-		if (revs->num_ignore_packed <= i)
+		if (p->pack_keep)
 			continue;
 
 		if (open_pack_index(p))
@@ -2208,7 +2200,7 @@ int cmd_pack_objects(int argc, const char **argv, const char *prefix)
 			continue;
 		}
 		if (!strcmp("--unpacked", arg) ||
-		    !prefixcmp(arg, "--unpacked=") ||
+		    !strcmp("--kept-pack-only", arg) ||
 		    !strcmp("--reflog", arg) ||
 		    !strcmp("--all", arg)) {
 			use_internal_rev_list = 1;
diff --git a/builtin-prune-packed.c b/builtin-prune-packed.c
index 10cb8df845..2d5b2cd353 100644
--- a/builtin-prune-packed.c
+++ b/builtin-prune-packed.c
@@ -23,7 +23,7 @@ static void prune_dir(int i, DIR *dir, char *pathname, int len, int opts)
 		memcpy(hex+2, de->d_name, 38);
 		if (get_sha1_hex(hex, sha1))
 			continue;
-		if (!has_sha1_pack(sha1, NULL))
+		if (!has_sha1_pack(sha1))
 			continue;
 		memcpy(pathname + len, de->d_name, 38);
 		if (opts & DRY_RUN)
diff --git a/builtin-remote.c b/builtin-remote.c
index ac69d37c8a..e445b8ba38 100644
--- a/builtin-remote.c
+++ b/builtin-remote.c
@@ -12,12 +12,17 @@ static const char * const builtin_remote_usage[] = {
 	"git remote add [-t <branch>] [-m <master>] [-f] [--mirror] <name> <url>",
 	"git remote rename <old> <new>",
 	"git remote rm <name>",
+	"git remote set-head <name> [-a | -d | <branch>]",
 	"git remote show [-n] <name>",
 	"git remote prune [-n | --dry-run] <name>",
 	"git remote [-v | --verbose] update [group]",
 	NULL
 };
 
+#define GET_REF_STATES (1<<0)
+#define GET_HEAD_NAMES (1<<1)
+#define GET_PUSH_REF_STATES (1<<2)
+
 static int verbose;
 
 static int show_all(void);
@@ -143,8 +148,9 @@ static int add(int argc, const char **argv)
 }
 
 struct branch_info {
-	char *remote;
+	char *remote_name;
 	struct string_list merge;
+	int rebase;
 };
 
 static struct string_list branch_list;
@@ -161,10 +167,11 @@ static const char *abbrev_ref(const char *name, const char *prefix)
 static int config_read_branches(const char *key, const char *value, void *cb)
 {
 	if (!prefixcmp(key, "branch.")) {
+		const char *orig_key = key;
 		char *name;
 		struct string_list_item *item;
 		struct branch_info *info;
-		enum { REMOTE, MERGE } type;
+		enum { REMOTE, MERGE, REBASE } type;
 
 		key += 7;
 		if (!postfixcmp(key, ".remote")) {
@@ -173,6 +180,9 @@ static int config_read_branches(const char *key, const char *value, void *cb)
 		} else if (!postfixcmp(key, ".merge")) {
 			name = xstrndup(key, strlen(key) - 6);
 			type = MERGE;
+		} else if (!postfixcmp(key, ".rebase")) {
+			name = xstrndup(key, strlen(key) - 7);
+			type = REBASE;
 		} else
 			return 0;
 
@@ -182,10 +192,10 @@ static int config_read_branches(const char *key, const char *value, void *cb)
 			item->util = xcalloc(sizeof(struct branch_info), 1);
 		info = item->util;
 		if (type == REMOTE) {
-			if (info->remote)
-				warning("more than one branch.%s", key);
-			info->remote = xstrdup(value);
-		} else {
+			if (info->remote_name)
+				warning("more than one %s", orig_key);
+			info->remote_name = xstrdup(value);
+		} else if (type == MERGE) {
 			char *space = strchr(value, ' ');
 			value = abbrev_branch(value);
 			while (space) {
@@ -196,7 +206,8 @@ static int config_read_branches(const char *key, const char *value, void *cb)
 				space = strchr(value, ' ');
 			}
 			string_list_append(xstrdup(value), &info->merge);
-		}
+		} else
+			info->rebase = git_config_bool(orig_key, value);
 	}
 	return 0;
 }
@@ -206,12 +217,12 @@ static void read_branches(void)
 	if (branch_list.nr)
 		return;
 	git_config(config_read_branches, NULL);
-	sort_string_list(&branch_list);
 }
 
 struct ref_states {
 	struct remote *remote;
-	struct string_list new, stale, tracked;
+	struct string_list new, stale, tracked, heads, push;
+	int queried;
 };
 
 static int handle_one_branch(const char *refname,
@@ -227,10 +238,8 @@ static int handle_one_branch(const char *refname,
 		const char *name = abbrev_branch(refspec.src);
 		/* symbolic refs pointing nowhere were handled already */
 		if ((flags & REF_ISSYMREF) ||
-				unsorted_string_list_has_string(&states->tracked,
-					name) ||
-				unsorted_string_list_has_string(&states->new,
-					name))
+		    string_list_has_string(&states->tracked, name) ||
+		    string_list_has_string(&states->new, name))
 			return 0;
 		item = string_list_append(name, &states->stale);
 		item->util = xstrdup(refname);
@@ -238,39 +247,162 @@ static int handle_one_branch(const char *refname,
 	return 0;
 }
 
-static int get_ref_states(const struct ref *ref, struct ref_states *states)
+static int get_ref_states(const struct ref *remote_refs, struct ref_states *states)
 {
 	struct ref *fetch_map = NULL, **tail = &fetch_map;
+	struct ref *ref;
 	int i;
 
 	for (i = 0; i < states->remote->fetch_refspec_nr; i++)
-		if (get_fetch_map(ref, states->remote->fetch + i, &tail, 1))
+		if (get_fetch_map(remote_refs, states->remote->fetch + i, &tail, 1))
 			die("Could not get fetch map for refspec %s",
 				states->remote->fetch_refspec[i]);
 
 	states->new.strdup_strings = states->tracked.strdup_strings = 1;
 	for (ref = fetch_map; ref; ref = ref->next) {
-		struct string_list *target = &states->tracked;
 		unsigned char sha1[20];
-		void *util = NULL;
-
 		if (!ref->peer_ref || read_ref(ref->peer_ref->name, sha1))
-			target = &states->new;
-		else {
-			target = &states->tracked;
-			if (hashcmp(sha1, ref->new_sha1))
-				util = &states;
-		}
-		string_list_append(abbrev_branch(ref->name), target)->util = util;
+			string_list_append(abbrev_branch(ref->name), &states->new);
+		else
+			string_list_append(abbrev_branch(ref->name), &states->tracked);
 	}
 	free_refs(fetch_map);
 
+	sort_string_list(&states->new);
+	sort_string_list(&states->tracked);
 	for_each_ref(handle_one_branch, states);
 	sort_string_list(&states->stale);
 
 	return 0;
 }
 
+struct push_info {
+	char *dest;
+	int forced;
+	enum {
+		PUSH_STATUS_CREATE = 0,
+		PUSH_STATUS_DELETE,
+		PUSH_STATUS_UPTODATE,
+		PUSH_STATUS_FASTFORWARD,
+		PUSH_STATUS_OUTOFDATE,
+		PUSH_STATUS_NOTQUERIED,
+	} status;
+};
+
+static int get_push_ref_states(const struct ref *remote_refs,
+	struct ref_states *states)
+{
+	struct remote *remote = states->remote;
+	struct ref *ref, *local_refs, *push_map, **push_tail;
+	if (remote->mirror)
+		return 0;
+
+	local_refs = get_local_heads();
+	ref = push_map = copy_ref_list(remote_refs);
+	while (ref->next)
+		ref = ref->next;
+	push_tail = &ref->next;
+
+	match_refs(local_refs, push_map, &push_tail, remote->push_refspec_nr,
+		   remote->push_refspec, MATCH_REFS_NONE);
+
+	states->push.strdup_strings = 1;
+	for (ref = push_map; ref; ref = ref->next) {
+		struct string_list_item *item;
+		struct push_info *info;
+
+		if (!ref->peer_ref)
+			continue;
+		hashcpy(ref->new_sha1, ref->peer_ref->new_sha1);
+
+		item = string_list_append(abbrev_branch(ref->peer_ref->name),
+					  &states->push);
+		item->util = xcalloc(sizeof(struct push_info), 1);
+		info = item->util;
+		info->forced = ref->force;
+		info->dest = xstrdup(abbrev_branch(ref->name));
+
+		if (is_null_sha1(ref->new_sha1)) {
+			info->status = PUSH_STATUS_DELETE;
+		} else if (!hashcmp(ref->old_sha1, ref->new_sha1))
+			info->status = PUSH_STATUS_UPTODATE;
+		else if (is_null_sha1(ref->old_sha1))
+			info->status = PUSH_STATUS_CREATE;
+		else if (has_sha1_file(ref->old_sha1) &&
+			 ref_newer(ref->new_sha1, ref->old_sha1))
+			info->status = PUSH_STATUS_FASTFORWARD;
+		else
+			info->status = PUSH_STATUS_OUTOFDATE;
+	}
+	free_refs(local_refs);
+	free_refs(push_map);
+	return 0;
+}
+
+static int get_push_ref_states_noquery(struct ref_states *states)
+{
+	int i;
+	struct remote *remote = states->remote;
+	struct string_list_item *item;
+	struct push_info *info;
+
+	if (remote->mirror)
+		return 0;
+
+	states->push.strdup_strings = 1;
+	if (!remote->push_refspec_nr) {
+		item = string_list_append("(matching)", &states->push);
+		info = item->util = xcalloc(sizeof(struct push_info), 1);
+		info->status = PUSH_STATUS_NOTQUERIED;
+		info->dest = xstrdup(item->string);
+	}
+	for (i = 0; i < remote->push_refspec_nr; i++) {
+		struct refspec *spec = remote->push + i;
+		char buf[PATH_MAX];
+		if (spec->matching)
+			item = string_list_append("(matching)", &states->push);
+		else if (spec->pattern) {
+			snprintf(buf, (sizeof(buf)), "%s*", spec->src);
+			item = string_list_append(buf, &states->push);
+			snprintf(buf, (sizeof(buf)), "%s*", spec->dst);
+		} else if (strlen(spec->src))
+			item = string_list_append(spec->src, &states->push);
+		else
+			item = string_list_append("(delete)", &states->push);
+
+		info = item->util = xcalloc(sizeof(struct push_info), 1);
+		info->forced = spec->force;
+		info->status = PUSH_STATUS_NOTQUERIED;
+		if (spec->pattern)
+			info->dest = xstrdup(buf);
+		else
+			info->dest = xstrdup(spec->dst ? spec->dst : item->string);
+	}
+	return 0;
+}
+
+static int get_head_names(const struct ref *remote_refs, struct ref_states *states)
+{
+	struct ref *ref, *matches;
+	struct ref *fetch_map = NULL, **fetch_map_tail = &fetch_map;
+	struct refspec refspec;
+
+	refspec.force = 0;
+	refspec.pattern = 1;
+	refspec.src = refspec.dst = "refs/heads/";
+	states->heads.strdup_strings = 1;
+	get_fetch_map(remote_refs, &refspec, &fetch_map_tail, 0);
+	matches = guess_remote_head(find_ref_by_name(remote_refs, "HEAD"),
+				    fetch_map, 1);
+	for(ref = matches; ref; ref = ref->next)
+		string_list_append(abbrev_branch(ref->name), &states->heads);
+
+	free_refs(fetch_map);
+	free_refs(matches);
+
+	return 0;
+}
+
 struct known_remote {
 	struct known_remote *next;
 	struct remote *remote;
@@ -466,7 +598,7 @@ static int mv(int argc, const char **argv)
 	for (i = 0; i < branch_list.nr; i++) {
 		struct string_list_item *item = branch_list.items + i;
 		struct branch_info *info = item->util;
-		if (info->remote && !strcmp(info->remote, rename.old)) {
+		if (info->remote_name && !strcmp(info->remote_name, rename.old)) {
 			strbuf_reset(&buf);
 			strbuf_addf(&buf, "branch.%s.remote", item->string);
 			if (git_config_set(buf.buf, rename.new)) {
@@ -484,9 +616,8 @@ static int mv(int argc, const char **argv)
 		struct string_list_item *item = remote_branches.items + i;
 		int flag = 0;
 		unsigned char sha1[20];
-		const char *symref;
 
-		symref = resolve_ref(item->string, sha1, 1, &flag);
+		resolve_ref(item->string, sha1, 1, &flag);
 		if (!(flag & REF_ISSYMREF))
 			continue;
 		if (delete_ref(item->string, NULL, REF_NODEREF))
@@ -576,7 +707,7 @@ static int rm(int argc, const char **argv)
 	for (i = 0; i < branch_list.nr; i++) {
 		struct string_list_item *item = branch_list.items + i;
 		struct branch_info *info = item->util;
-		if (info->remote && !strcmp(info->remote, remote->name)) {
+		if (info->remote_name && !strcmp(info->remote_name, remote->name)) {
 			const char *keys[] = { "remote", "merge", NULL }, **k;
 			for (k = keys; *k; k++) {
 				strbuf_reset(&buf);
@@ -618,18 +749,37 @@ static int rm(int argc, const char **argv)
 	return result;
 }
 
-static void show_list(const char *title, struct string_list *list,
-		      const char *extra_arg)
+void clear_push_info(void *util, const char *string)
 {
-	int i;
+	struct push_info *info = util;
+	free(info->dest);
+	free(info);
+}
 
-	if (!list->nr)
-		return;
+static void free_remote_ref_states(struct ref_states *states)
+{
+	string_list_clear(&states->new, 0);
+	string_list_clear(&states->stale, 0);
+	string_list_clear(&states->tracked, 0);
+	string_list_clear(&states->heads, 0);
+	string_list_clear_func(&states->push, clear_push_info);
+}
 
-	printf(title, list->nr > 1 ? "es" : "", extra_arg);
-	printf("\n");
-	for (i = 0; i < list->nr; i++)
-		printf("    %s\n", list->items[i].string);
+static int append_ref_to_tracked_list(const char *refname,
+	const unsigned char *sha1, int flags, void *cb_data)
+{
+	struct ref_states *states = cb_data;
+	struct refspec refspec;
+
+	if (flags & REF_ISSYMREF)
+		return 0;
+
+	memset(&refspec, 0, sizeof(refspec));
+	refspec.dst = (char *)refname;
+	if (!remote_find_tracking(states->remote, &refspec))
+		string_list_append(abbrev_branch(refspec.src), &states->tracked);
+
+	return 0;
 }
 
 static int get_remote_ref_states(const char *name,
@@ -637,7 +787,7 @@ static int get_remote_ref_states(const char *name,
 				 int query)
 {
 	struct transport *transport;
-	const struct ref *ref;
+	const struct ref *remote_refs;
 
 	states->remote = remote_get(name);
 	if (!states->remote)
@@ -648,102 +798,318 @@ static int get_remote_ref_states(const char *name,
 	if (query) {
 		transport = transport_get(NULL, states->remote->url_nr > 0 ?
 			states->remote->url[0] : NULL);
-		ref = transport_get_remote_refs(transport);
+		remote_refs = transport_get_remote_refs(transport);
 		transport_disconnect(transport);
 
-		get_ref_states(ref, states);
+		states->queried = 1;
+		if (query & GET_REF_STATES)
+			get_ref_states(remote_refs, states);
+		if (query & GET_HEAD_NAMES)
+			get_head_names(remote_refs, states);
+		if (query & GET_PUSH_REF_STATES)
+			get_push_ref_states(remote_refs, states);
+	} else {
+		for_each_ref(append_ref_to_tracked_list, states);
+		sort_string_list(&states->tracked);
+		get_push_ref_states_noquery(states);
 	}
 
 	return 0;
 }
 
-static int append_ref_to_tracked_list(const char *refname,
-	const unsigned char *sha1, int flags, void *cb_data)
+struct show_info {
+	struct string_list *list;
+	struct ref_states *states;
+	int width, width2;
+	int any_rebase;
+};
+
+int add_remote_to_show_info(struct string_list_item *item, void *cb_data)
 {
-	struct ref_states *states = cb_data;
-	struct refspec refspec;
+	struct show_info *info = cb_data;
+	int n = strlen(item->string);
+	if (n > info->width)
+		info->width = n;
+	string_list_insert(item->string, info->list);
+	return 0;
+}
 
-	memset(&refspec, 0, sizeof(refspec));
-	refspec.dst = (char *)refname;
-	if (!remote_find_tracking(states->remote, &refspec))
-		string_list_append(abbrev_branch(refspec.src), &states->tracked);
+int show_remote_info_item(struct string_list_item *item, void *cb_data)
+{
+	struct show_info *info = cb_data;
+	struct ref_states *states = info->states;
+	const char *name = item->string;
+
+	if (states->queried) {
+		const char *fmt = "%s";
+		const char *arg = "";
+		if (string_list_has_string(&states->new, name)) {
+			fmt = " new (next fetch will store in remotes/%s)";
+			arg = states->remote->name;
+		} else if (string_list_has_string(&states->tracked, name))
+			arg = " tracked";
+		else if (string_list_has_string(&states->stale, name))
+			arg = " stale (use 'git remote prune' to remove)";
+		else
+			arg = " ???";
+		printf("    %-*s", info->width, name);
+		printf(fmt, arg);
+		printf("\n");
+	} else
+		printf("    %s\n", name);
+
+	return 0;
+}
+
+int add_local_to_show_info(struct string_list_item *branch_item, void *cb_data)
+{
+	struct show_info *show_info = cb_data;
+	struct ref_states *states = show_info->states;
+	struct branch_info *branch_info = branch_item->util;
+	struct string_list_item *item;
+	int n;
+
+	if (!branch_info->merge.nr || !branch_info->remote_name ||
+	    strcmp(states->remote->name, branch_info->remote_name))
+		return 0;
+	if ((n = strlen(branch_item->string)) > show_info->width)
+		show_info->width = n;
+	if (branch_info->rebase)
+		show_info->any_rebase = 1;
+
+	item = string_list_insert(branch_item->string, show_info->list);
+	item->util = branch_info;
+
+	return 0;
+}
+
+int show_local_info_item(struct string_list_item *item, void *cb_data)
+{
+	struct show_info *show_info = cb_data;
+	struct branch_info *branch_info = item->util;
+	struct string_list *merge = &branch_info->merge;
+	const char *also;
+	int i;
+
+	if (branch_info->rebase && branch_info->merge.nr > 1) {
+		error("invalid branch.%s.merge; cannot rebase onto > 1 branch",
+			item->string);
+		return 0;
+	}
+
+	printf("    %-*s ", show_info->width, item->string);
+	if (branch_info->rebase) {
+		printf("rebases onto remote %s\n", merge->items[0].string);
+		return 0;
+	} else if (show_info->any_rebase) {
+		printf(" merges with remote %s\n", merge->items[0].string);
+		also = "    and with remote";
+	} else {
+		printf("merges with remote %s\n", merge->items[0].string);
+		also = "   and with remote";
+	}
+	for (i = 1; i < merge->nr; i++)
+		printf("    %-*s %s %s\n", show_info->width, "", also,
+		       merge->items[i].string);
+
+	return 0;
+}
 
+int add_push_to_show_info(struct string_list_item *push_item, void *cb_data)
+{
+	struct show_info *show_info = cb_data;
+	struct push_info *push_info = push_item->util;
+	struct string_list_item *item;
+	int n;
+	if ((n = strlen(push_item->string)) > show_info->width)
+		show_info->width = n;
+	if ((n = strlen(push_info->dest)) > show_info->width2)
+		show_info->width2 = n;
+	item = string_list_append(push_item->string, show_info->list);
+	item->util = push_item->util;
+	return 0;
+}
+
+int show_push_info_item(struct string_list_item *item, void *cb_data)
+{
+	struct show_info *show_info = cb_data;
+	struct push_info *push_info = item->util;
+	char *src = item->string, *status = NULL;
+
+	switch (push_info->status) {
+	case PUSH_STATUS_CREATE:
+		status = "create";
+		break;
+	case PUSH_STATUS_DELETE:
+		status = "delete";
+		src = "(none)";
+		break;
+	case PUSH_STATUS_UPTODATE:
+		status = "up to date";
+		break;
+	case PUSH_STATUS_FASTFORWARD:
+		status = "fast forwardable";
+		break;
+	case PUSH_STATUS_OUTOFDATE:
+		status = "local out of date";
+		break;
+	case PUSH_STATUS_NOTQUERIED:
+		break;
+	}
+	if (status)
+		printf("    %-*s %s to %-*s (%s)\n", show_info->width, src,
+			push_info->forced ? "forces" : "pushes",
+			show_info->width2, push_info->dest, status);
+	else
+		printf("    %-*s %s to %s\n", show_info->width, src,
+			push_info->forced ? "forces" : "pushes",
+			push_info->dest);
 	return 0;
 }
 
 static int show(int argc, const char **argv)
 {
-	int no_query = 0, result = 0;
+	int no_query = 0, result = 0, query_flag = 0;
 	struct option options[] = {
 		OPT_GROUP("show specific options"),
 		OPT_BOOLEAN('n', NULL, &no_query, "do not query remotes"),
 		OPT_END()
 	};
 	struct ref_states states;
+	struct string_list info_list = { NULL, 0, 0, 0 };
+	struct show_info info;
 
 	argc = parse_options(argc, argv, options, builtin_remote_usage, 0);
 
 	if (argc < 1)
 		return show_all();
 
+	if (!no_query)
+		query_flag = (GET_REF_STATES | GET_HEAD_NAMES | GET_PUSH_REF_STATES);
+
 	memset(&states, 0, sizeof(states));
+	memset(&info, 0, sizeof(info));
+	info.states = &states;
+	info.list = &info_list;
 	for (; argc; argc--, argv++) {
 		int i;
 
-		get_remote_ref_states(*argv, &states, !no_query);
+		get_remote_ref_states(*argv, &states, query_flag);
 
 		printf("* remote %s\n  URL: %s\n", *argv,
 			states.remote->url_nr > 0 ?
 				states.remote->url[0] : "(no URL)");
-
-		for (i = 0; i < branch_list.nr; i++) {
-			struct string_list_item *branch = branch_list.items + i;
-			struct branch_info *info = branch->util;
-			int j;
-
-			if (!info->merge.nr || strcmp(*argv, info->remote))
-				continue;
-			printf("  Remote branch%s merged with 'git pull' "
-				"while on branch %s\n   ",
-				info->merge.nr > 1 ? "es" : "",
-				branch->string);
-			for (j = 0; j < info->merge.nr; j++)
-				printf(" %s", info->merge.items[j].string);
-			printf("\n");
+		if (no_query)
+			printf("  HEAD branch: (not queried)\n");
+		else if (!states.heads.nr)
+			printf("  HEAD branch: (unknown)\n");
+		else if (states.heads.nr == 1)
+			printf("  HEAD branch: %s\n", states.heads.items[0].string);
+		else {
+			printf("  HEAD branch (remote HEAD is ambiguous,"
+			       " may be one of the following):\n");
+			for (i = 0; i < states.heads.nr; i++)
+				printf("    %s\n", states.heads.items[i].string);
 		}
 
-		if (!no_query) {
-			show_list("  New remote branch%s (next fetch "
-				"will store in remotes/%s)",
-				&states.new, states.remote->name);
-			show_list("  Stale tracking branch%s (use 'git remote "
-				"prune')", &states.stale, "");
-		}
+		/* remote branch info */
+		info.width = 0;
+		for_each_string_list(add_remote_to_show_info, &states.new, &info);
+		for_each_string_list(add_remote_to_show_info, &states.tracked, &info);
+		for_each_string_list(add_remote_to_show_info, &states.stale, &info);
+		if (info.list->nr)
+			printf("  Remote branch%s:%s\n",
+			       info.list->nr > 1 ? "es" : "",
+				no_query ? " (status not queried)" : "");
+		for_each_string_list(show_remote_info_item, info.list, &info);
+		string_list_clear(info.list, 0);
+
+		/* git pull info */
+		info.width = 0;
+		info.any_rebase = 0;
+		for_each_string_list(add_local_to_show_info, &branch_list, &info);
+		if (info.list->nr)
+			printf("  Local branch%s configured for 'git pull':\n",
+			       info.list->nr > 1 ? "es" : "");
+		for_each_string_list(show_local_info_item, info.list, &info);
+		string_list_clear(info.list, 0);
+
+		/* git push info */
+		if (states.remote->mirror)
+			printf("  Local refs will be mirrored by 'git push'\n");
+
+		info.width = info.width2 = 0;
+		for_each_string_list(add_push_to_show_info, &states.push, &info);
+		sort_string_list(info.list);
+		if (info.list->nr)
+			printf("  Local ref%s configured for 'git push'%s:\n",
+				info.list->nr > 1 ? "s" : "",
+				no_query ? " (status not queried)" : "");
+		for_each_string_list(show_push_info_item, info.list, &info);
+		string_list_clear(info.list, 0);
+
+		free_remote_ref_states(&states);
+	}
 
-		if (no_query)
-			for_each_ref(append_ref_to_tracked_list, &states);
-		show_list("  Tracked remote branch%s", &states.tracked, "");
-
-		if (states.remote->push_refspec_nr) {
-			printf("  Local branch%s pushed with 'git push'\n",
-				states.remote->push_refspec_nr > 1 ?
-					"es" : "");
-			for (i = 0; i < states.remote->push_refspec_nr; i++) {
-				struct refspec *spec = states.remote->push + i;
-				printf("    %s%s%s%s\n",
-				       spec->force ? "+" : "",
-				       abbrev_branch(spec->src),
-				       spec->dst ? ":" : "",
-				       spec->dst ? abbrev_branch(spec->dst) : "");
-			}
-		}
+	return result;
+}
 
-		/* NEEDSWORK: free remote */
-		string_list_clear(&states.new, 0);
-		string_list_clear(&states.stale, 0);
-		string_list_clear(&states.tracked, 0);
+static int set_head(int argc, const char **argv)
+{
+	int i, opt_a = 0, opt_d = 0, result = 0;
+	struct strbuf buf = STRBUF_INIT, buf2 = STRBUF_INIT;
+	char *head_name = NULL;
+
+	struct option options[] = {
+		OPT_GROUP("set-head specific options"),
+		OPT_BOOLEAN('a', "auto", &opt_a,
+			    "set refs/remotes/<name>/HEAD according to remote"),
+		OPT_BOOLEAN('d', "delete", &opt_d,
+			    "delete refs/remotes/<name>/HEAD"),
+		OPT_END()
+	};
+	argc = parse_options(argc, argv, options, builtin_remote_usage, 0);
+	if (argc)
+		strbuf_addf(&buf, "refs/remotes/%s/HEAD", argv[0]);
+
+	if (!opt_a && !opt_d && argc == 2) {
+		head_name = xstrdup(argv[1]);
+	} else if (opt_a && !opt_d && argc == 1) {
+		struct ref_states states;
+		memset(&states, 0, sizeof(states));
+		get_remote_ref_states(argv[0], &states, GET_HEAD_NAMES);
+		if (!states.heads.nr)
+			result |= error("Cannot determine remote HEAD");
+		else if (states.heads.nr > 1) {
+			result |= error("Multiple remote HEAD branches. "
+					"Please choose one explicitly with:");
+			for (i = 0; i < states.heads.nr; i++)
+				fprintf(stderr, "  git remote set-head %s %s\n",
+					argv[0], states.heads.items[i].string);
+		} else
+			head_name = xstrdup(states.heads.items[0].string);
+		free_remote_ref_states(&states);
+	} else if (opt_d && !opt_a && argc == 1) {
+		if (delete_ref(buf.buf, NULL, REF_NODEREF))
+			result |= error("Could not delete %s", buf.buf);
+	} else
+		usage_with_options(builtin_remote_usage, options);
+
+	if (head_name) {
+		unsigned char sha1[20];
+		strbuf_addf(&buf2, "refs/remotes/%s/%s", argv[0], head_name);
+		/* make sure it's valid */
+		if (!resolve_ref(buf2.buf, sha1, 1, NULL))
+			result |= error("Not a valid ref: %s", buf2.buf);
+		else if (create_symref(buf.buf, buf2.buf, "remote set-head"))
+			result |= error("Could not setup %s", buf.buf);
+		if (opt_a)
+			printf("%s/HEAD set to %s\n", argv[0], head_name);
+		free(head_name);
 	}
 
+	strbuf_release(&buf);
+	strbuf_release(&buf2);
 	return result;
 }
 
@@ -771,7 +1137,7 @@ static int prune(int argc, const char **argv)
 	for (; argc; argc--, argv++) {
 		int i;
 
-		get_remote_ref_states(*argv, &states, 1);
+		get_remote_ref_states(*argv, &states, GET_REF_STATES);
 
 		if (states.stale.nr) {
 			printf("Pruning %s\n", *argv);
@@ -792,10 +1158,7 @@ static int prune(int argc, const char **argv)
 			warn_dangling_symref(dangling_msg, refname);
 		}
 
-		/* NEEDSWORK: free remote */
-		string_list_clear(&states.new, 0);
-		string_list_clear(&states.stale, 0);
-		string_list_clear(&states.tracked, 0);
+		free_remote_ref_states(&states);
 	}
 
 	return result;
@@ -920,6 +1283,8 @@ int cmd_remote(int argc, const char **argv, const char *prefix)
 		result = mv(argc, argv);
 	else if (!strcmp(argv[0], "rm"))
 		result = rm(argc, argv);
+	else if (!strcmp(argv[0], "set-head"))
+		result = set_head(argc, argv);
 	else if (!strcmp(argv[0], "show"))
 		result = show(argc, argv);
 	else if (!strcmp(argv[0], "prune"))
diff --git a/builtin-revert.c b/builtin-revert.c
index d210150671..3f2614e1bb 100644
--- a/builtin-revert.c
+++ b/builtin-revert.c
@@ -376,6 +376,7 @@ static int revert_or_cherry_pick(int argc, const char **argv)
 	    (write_cache(index_fd, active_cache, active_nr) ||
 	     commit_locked_index(&index_lock)))
 		die("%s: Unable to write new index file", me);
+	rollback_lock_file(&index_lock);
 
 	if (!clean) {
 		add_to_msg("\nConflicts:\n\n");
diff --git a/builtin-send-pack.c b/builtin-send-pack.c
index d65d019692..9072905f10 100644
--- a/builtin-send-pack.c
+++ b/builtin-send-pack.c
@@ -1,6 +1,5 @@
 #include "cache.h"
 #include "commit.h"
-#include "tag.h"
 #include "refs.h"
 #include "pkt-line.h"
 #include "run-command.h"
@@ -84,82 +83,8 @@ static int pack_objects(int fd, struct ref *refs, struct extra_have_objects *ext
 	return 0;
 }
 
-static void unmark_and_free(struct commit_list *list, unsigned int mark)
-{
-	while (list) {
-		struct commit_list *temp = list;
-		temp->item->object.flags &= ~mark;
-		list = temp->next;
-		free(temp);
-	}
-}
-
-static int ref_newer(const unsigned char *new_sha1,
-		     const unsigned char *old_sha1)
-{
-	struct object *o;
-	struct commit *old, *new;
-	struct commit_list *list, *used;
-	int found = 0;
-
-	/* Both new and old must be commit-ish and new is descendant of
-	 * old.  Otherwise we require --force.
-	 */
-	o = deref_tag(parse_object(old_sha1), NULL, 0);
-	if (!o || o->type != OBJ_COMMIT)
-		return 0;
-	old = (struct commit *) o;
-
-	o = deref_tag(parse_object(new_sha1), NULL, 0);
-	if (!o || o->type != OBJ_COMMIT)
-		return 0;
-	new = (struct commit *) o;
-
-	if (parse_commit(new) < 0)
-		return 0;
-
-	used = list = NULL;
-	commit_list_insert(new, &list);
-	while (list) {
-		new = pop_most_recent_commit(&list, 1);
-		commit_list_insert(new, &used);
-		if (new == old) {
-			found = 1;
-			break;
-		}
-	}
-	unmark_and_free(list, 1);
-	unmark_and_free(used, 1);
-	return found;
-}
-
-static struct ref *local_refs, **local_tail;
 static struct ref *remote_refs, **remote_tail;
 
-static int one_local_ref(const char *refname, const unsigned char *sha1, int flag, void *cb_data)
-{
-	struct ref *ref;
-	int len;
-
-	/* we already know it starts with refs/ to get here */
-	if (check_ref_format(refname + 5))
-		return 0;
-
-	len = strlen(refname) + 1;
-	ref = xcalloc(1, sizeof(*ref) + len);
-	hashcpy(ref->new_sha1, sha1);
-	memcpy(ref->name, refname, len);
-	*local_tail = ref;
-	local_tail = &ref->next;
-	return 0;
-}
-
-static void get_local_heads(void)
-{
-	local_tail = &local_refs;
-	for_each_ref(one_local_ref, NULL);
-}
-
 static int receive_status(int in, struct ref *refs)
 {
 	struct ref *hint;
@@ -387,7 +312,7 @@ static int refs_pushed(struct ref *ref)
 
 static int do_send_pack(int in, int out, struct remote *remote, const char *dest, int nr_refspec, const char **refspec)
 {
-	struct ref *ref;
+	struct ref *ref, *local_refs;
 	int new_refs;
 	int ask_for_status_report = 0;
 	int allow_deleting_refs = 0;
@@ -405,7 +330,7 @@ static int do_send_pack(int in, int out, struct remote *remote, const char *dest
 	/* No funny business with the matcher */
 	remote_tail = get_remote_heads(in, &remote_refs, 0, NULL, REF_NORMAL,
 				       &extra_have);
-	get_local_heads();
+	local_refs = get_local_heads();
 
 	/* Does the other end support the reporting? */
 	if (server_supports("report-status"))
diff --git a/builtin-shortlog.c b/builtin-shortlog.c
index badd912038..b28091b445 100644
--- a/builtin-shortlog.c
+++ b/builtin-shortlog.c
@@ -101,7 +101,6 @@ static void insert_one_record(struct shortlog *log,
 	}
 	while (*oneline && isspace(*oneline) && *oneline != '\n')
 		oneline++;
-	len = eol - oneline;
 	format_subject(&subject, oneline, " ");
 	buffer = strbuf_detach(&subject, NULL);
 
diff --git a/builtin-update-index.c b/builtin-update-index.c
index dd43d5bef4..1fde893cfa 100644
--- a/builtin-update-index.c
+++ b/builtin-update-index.c
@@ -195,7 +195,7 @@ static int process_path(const char *path)
 	struct stat st;
 
 	len = strlen(path);
-	if (has_symlink_leading_path(len, path))
+	if (has_symlink_leading_path(path, len))
 		return error("'%s' is beyond a symbolic link", path);
 
 	/*
diff --git a/cache.h b/cache.h
index 189151de25..39789ee94a 100644
--- a/cache.h
+++ b/cache.h
@@ -140,8 +140,8 @@ struct ondisk_cache_entry_extended {
 };
 
 struct cache_entry {
-	unsigned int ce_ctime;
-	unsigned int ce_mtime;
+	struct cache_time ce_ctime;
+	struct cache_time ce_mtime;
 	unsigned int ce_dev;
 	unsigned int ce_ino;
 	unsigned int ce_mode;
@@ -282,7 +282,7 @@ struct index_state {
 	struct cache_entry **cache;
 	unsigned int cache_nr, cache_alloc, cache_changed;
 	struct cache_tree *cache_tree;
-	time_t timestamp;
+	struct cache_time timestamp;
 	void *alloc;
 	unsigned name_hash_initialized : 1,
 		 initialized : 1;
@@ -428,7 +428,7 @@ extern int read_index_preload(struct index_state *, const char **pathspec);
 extern int read_index_from(struct index_state *, const char *path);
 extern int is_index_unborn(struct index_state *);
 extern int read_index_unmerged(struct index_state *);
-extern int write_index(const struct index_state *, int newfd);
+extern int write_index(struct index_state *, int newfd);
 extern int discard_index(struct index_state *);
 extern int unmerged_index(const struct index_state *);
 extern int verify_path(const char *path);
@@ -443,6 +443,7 @@ extern int add_index_entry(struct index_state *, struct cache_entry *ce, int opt
 extern struct cache_entry *refresh_cache_entry(struct cache_entry *ce, int really);
 extern void rename_index_entry_at(struct index_state *, int pos, const char *new_name);
 extern int remove_index_entry_at(struct index_state *, int pos);
+extern void remove_marked_cache_entries(struct index_state *istate);
 extern int remove_file_from_index(struct index_state *, const char *path);
 #define ADD_CACHE_VERBOSE 1
 #define ADD_CACHE_PRETEND 2
@@ -644,7 +645,8 @@ extern int check_sha1_signature(const unsigned char *sha1, void *buf, unsigned l
 
 extern int move_temp_to_file(const char *tmpfile, const char *filename);
 
-extern int has_sha1_pack(const unsigned char *sha1, const char **ignore);
+extern int has_sha1_pack(const unsigned char *sha1);
+extern int has_sha1_kept_pack(const unsigned char *sha1);
 extern int has_sha1_file(const unsigned char *sha1);
 extern int has_loose_object_nonlocal(const unsigned char *sha1);
 
@@ -724,11 +726,13 @@ struct checkout {
 };
 
 extern int checkout_entry(struct cache_entry *ce, const struct checkout *state, char *topath);
-extern int has_symlink_leading_path(int len, const char *name);
-extern int has_symlink_or_noent_leading_path(int len, const char *name);
-extern int has_dirs_only_path(int len, const char *name, int prefix_len);
-extern void invalidate_lstat_cache(int len, const char *name);
+extern int has_symlink_leading_path(const char *name, int len);
+extern int has_symlink_or_noent_leading_path(const char *name, int len);
+extern int has_dirs_only_path(const char *name, int len, int prefix_len);
+extern void invalidate_lstat_cache(const char *name, int len);
 extern void clear_lstat_cache(void);
+extern void schedule_dir_for_removal(const char *name, int len);
+extern void remove_scheduled_dirs(void);
 
 extern struct alternate_object_database {
 	struct alternate_object_database *next;
@@ -801,7 +805,7 @@ struct ref {
 #define REF_HEADS	(1u << 1)
 #define REF_TAGS	(1u << 2)
 
-extern struct ref *find_ref_by_name(struct ref *list, const char *name);
+extern struct ref *find_ref_by_name(const struct ref *list, const char *name);
 
 #define CONNECT_VERBOSE       (1u << 0)
 extern struct child_process *git_connect(int fd[2], const char *url, const char *prog, int flags);
@@ -839,7 +843,6 @@ extern void *unpack_entry(struct packed_git *, off_t, enum object_type *, unsign
 extern unsigned long unpack_object_header_buffer(const unsigned char *buf, unsigned long len, enum object_type *type, unsigned long *sizep);
 extern unsigned long get_size_from_delta(struct packed_git *, struct pack_window **, off_t);
 extern const char *packed_object_info_detail(struct packed_git *, off_t, unsigned long *, unsigned long *, unsigned int *, unsigned char *);
-extern int matches_pack_name(struct packed_git *p, const char *name);
 
 /* Dumb servers support */
 extern int update_server_info(int);
diff --git a/combine-diff.c b/combine-diff.c
index bccc018ab2..066ce841ed 100644
--- a/combine-diff.c
+++ b/combine-diff.c
@@ -526,7 +526,6 @@ static void dump_sline(struct sline *sline, unsigned long cnt, int num_parent,
 		return; /* result deleted */
 
 	while (1) {
-		struct sline *sl = &sline[lno];
 		unsigned long hunk_end;
 		unsigned long rlines;
 		const char *hunk_comment = NULL;
@@ -592,7 +591,7 @@ static void dump_sline(struct sline *sline, unsigned long cnt, int num_parent,
 			struct lline *ll;
 			int j;
 			unsigned long p_mask;
-			sl = &sline[lno++];
+			struct sline *sl = &sline[lno++];
 			ll = (sl->flag & no_pre_delete) ? NULL : sl->lost_head;
 			while (ll) {
 				fputs(c_old, stdout);
@@ -713,9 +712,7 @@ static void show_patch_diff(struct combine_diff_path *elem, int num_parent,
 			result_size = buf.len;
 			result = strbuf_detach(&buf, NULL);
 			elem->mode = canon_mode(st.st_mode);
-		}
-		else if (0 <= (fd = open(elem->path, O_RDONLY)) &&
-			 !fstat(fd, &st)) {
+		} else if (0 <= (fd = open(elem->path, O_RDONLY))) {
 			size_t len = xsize_t(st.st_size);
 			ssize_t done;
 			int is_file, i;
diff --git a/compat/memmem.c b/compat/memmem.c
index cd0d877364..56bcb4277f 100644
--- a/compat/memmem.c
+++ b/compat/memmem.c
@@ -5,6 +5,8 @@ void *gitmemmem(const void *haystack, size_t haystack_len,
 {
 	const char *begin = haystack;
 	const char *last_possible = begin + haystack_len - needle_len;
+	const char *tail = needle;
+	char point;
 
 	/*
 	 * The first occurrence of the empty string is deemed to occur at
@@ -20,8 +22,9 @@ void *gitmemmem(const void *haystack, size_t haystack_len,
 	if (haystack_len < needle_len)
 		return NULL;
 
+	point = *tail++;
 	for (; begin <= last_possible; begin++) {
-		if (!memcmp(begin, needle, needle_len))
+		if (*begin == point && !memcmp(begin + 1, tail, needle_len - 1))
 			return (void *)begin;
 	}
 
diff --git a/compat/mingw.c b/compat/mingw.c
index 27bcf3fd6b..171fa85e4a 100644
--- a/compat/mingw.c
+++ b/compat/mingw.c
@@ -4,6 +4,119 @@
 
 unsigned int _CRT_fmode = _O_BINARY;
 
+static int err_win_to_posix(DWORD winerr)
+{
+	int error = ENOSYS;
+	switch(winerr) {
+	case ERROR_ACCESS_DENIED: error = EACCES; break;
+	case ERROR_ACCOUNT_DISABLED: error = EACCES; break;
+	case ERROR_ACCOUNT_RESTRICTION: error = EACCES; break;
+	case ERROR_ALREADY_ASSIGNED: error = EBUSY; break;
+	case ERROR_ALREADY_EXISTS: error = EEXIST; break;
+	case ERROR_ARITHMETIC_OVERFLOW: error = ERANGE; break;
+	case ERROR_BAD_COMMAND: error = EIO; break;
+	case ERROR_BAD_DEVICE: error = ENODEV; break;
+	case ERROR_BAD_DRIVER_LEVEL: error = ENXIO; break;
+	case ERROR_BAD_EXE_FORMAT: error = ENOEXEC; break;
+	case ERROR_BAD_FORMAT: error = ENOEXEC; break;
+	case ERROR_BAD_LENGTH: error = EINVAL; break;
+	case ERROR_BAD_PATHNAME: error = ENOENT; break;
+	case ERROR_BAD_PIPE: error = EPIPE; break;
+	case ERROR_BAD_UNIT: error = ENODEV; break;
+	case ERROR_BAD_USERNAME: error = EINVAL; break;
+	case ERROR_BROKEN_PIPE: error = EPIPE; break;
+	case ERROR_BUFFER_OVERFLOW: error = ENAMETOOLONG; break;
+	case ERROR_BUSY: error = EBUSY; break;
+	case ERROR_BUSY_DRIVE: error = EBUSY; break;
+	case ERROR_CALL_NOT_IMPLEMENTED: error = ENOSYS; break;
+	case ERROR_CANNOT_MAKE: error = EACCES; break;
+	case ERROR_CANTOPEN: error = EIO; break;
+	case ERROR_CANTREAD: error = EIO; break;
+	case ERROR_CANTWRITE: error = EIO; break;
+	case ERROR_CRC: error = EIO; break;
+	case ERROR_CURRENT_DIRECTORY: error = EACCES; break;
+	case ERROR_DEVICE_IN_USE: error = EBUSY; break;
+	case ERROR_DEV_NOT_EXIST: error = ENODEV; break;
+	case ERROR_DIRECTORY: error = EINVAL; break;
+	case ERROR_DIR_NOT_EMPTY: error = ENOTEMPTY; break;
+	case ERROR_DISK_CHANGE: error = EIO; break;
+	case ERROR_DISK_FULL: error = ENOSPC; break;
+	case ERROR_DRIVE_LOCKED: error = EBUSY; break;
+	case ERROR_ENVVAR_NOT_FOUND: error = EINVAL; break;
+	case ERROR_EXE_MARKED_INVALID: error = ENOEXEC; break;
+	case ERROR_FILENAME_EXCED_RANGE: error = ENAMETOOLONG; break;
+	case ERROR_FILE_EXISTS: error = EEXIST; break;
+	case ERROR_FILE_INVALID: error = ENODEV; break;
+	case ERROR_FILE_NOT_FOUND: error = ENOENT; break;
+	case ERROR_GEN_FAILURE: error = EIO; break;
+	case ERROR_HANDLE_DISK_FULL: error = ENOSPC; break;
+	case ERROR_INSUFFICIENT_BUFFER: error = ENOMEM; break;
+	case ERROR_INVALID_ACCESS: error = EACCES; break;
+	case ERROR_INVALID_ADDRESS: error = EFAULT; break;
+	case ERROR_INVALID_BLOCK: error = EFAULT; break;
+	case ERROR_INVALID_DATA: error = EINVAL; break;
+	case ERROR_INVALID_DRIVE: error = ENODEV; break;
+	case ERROR_INVALID_EXE_SIGNATURE: error = ENOEXEC; break;
+	case ERROR_INVALID_FLAGS: error = EINVAL; break;
+	case ERROR_INVALID_FUNCTION: error = ENOSYS; break;
+	case ERROR_INVALID_HANDLE: error = EBADF; break;
+	case ERROR_INVALID_LOGON_HOURS: error = EACCES; break;
+	case ERROR_INVALID_NAME: error = EINVAL; break;
+	case ERROR_INVALID_OWNER: error = EINVAL; break;
+	case ERROR_INVALID_PARAMETER: error = EINVAL; break;
+	case ERROR_INVALID_PASSWORD: error = EPERM; break;
+	case ERROR_INVALID_PRIMARY_GROUP: error = EINVAL; break;
+	case ERROR_INVALID_SIGNAL_NUMBER: error = EINVAL; break;
+	case ERROR_INVALID_TARGET_HANDLE: error = EIO; break;
+	case ERROR_INVALID_WORKSTATION: error = EACCES; break;
+	case ERROR_IO_DEVICE: error = EIO; break;
+	case ERROR_IO_INCOMPLETE: error = EINTR; break;
+	case ERROR_LOCKED: error = EBUSY; break;
+	case ERROR_LOCK_VIOLATION: error = EACCES; break;
+	case ERROR_LOGON_FAILURE: error = EACCES; break;
+	case ERROR_MAPPED_ALIGNMENT: error = EINVAL; break;
+	case ERROR_META_EXPANSION_TOO_LONG: error = E2BIG; break;
+	case ERROR_MORE_DATA: error = EPIPE; break;
+	case ERROR_NEGATIVE_SEEK: error = ESPIPE; break;
+	case ERROR_NOACCESS: error = EFAULT; break;
+	case ERROR_NONE_MAPPED: error = EINVAL; break;
+	case ERROR_NOT_ENOUGH_MEMORY: error = ENOMEM; break;
+	case ERROR_NOT_READY: error = EAGAIN; break;
+	case ERROR_NOT_SAME_DEVICE: error = EXDEV; break;
+	case ERROR_NO_DATA: error = EPIPE; break;
+	case ERROR_NO_MORE_SEARCH_HANDLES: error = EIO; break;
+	case ERROR_NO_PROC_SLOTS: error = EAGAIN; break;
+	case ERROR_NO_SUCH_PRIVILEGE: error = EACCES; break;
+	case ERROR_OPEN_FAILED: error = EIO; break;
+	case ERROR_OPEN_FILES: error = EBUSY; break;
+	case ERROR_OPERATION_ABORTED: error = EINTR; break;
+	case ERROR_OUTOFMEMORY: error = ENOMEM; break;
+	case ERROR_PASSWORD_EXPIRED: error = EACCES; break;
+	case ERROR_PATH_BUSY: error = EBUSY; break;
+	case ERROR_PATH_NOT_FOUND: error = ENOENT; break;
+	case ERROR_PIPE_BUSY: error = EBUSY; break;
+	case ERROR_PIPE_CONNECTED: error = EPIPE; break;
+	case ERROR_PIPE_LISTENING: error = EPIPE; break;
+	case ERROR_PIPE_NOT_CONNECTED: error = EPIPE; break;
+	case ERROR_PRIVILEGE_NOT_HELD: error = EACCES; break;
+	case ERROR_READ_FAULT: error = EIO; break;
+	case ERROR_SEEK: error = EIO; break;
+	case ERROR_SEEK_ON_DEVICE: error = ESPIPE; break;
+	case ERROR_SHARING_BUFFER_EXCEEDED: error = ENFILE; break;
+	case ERROR_SHARING_VIOLATION: error = EACCES; break;
+	case ERROR_STACK_OVERFLOW: error = ENOMEM; break;
+	case ERROR_SWAPERROR: error = ENOENT; break;
+	case ERROR_TOO_MANY_MODULES: error = EMFILE; break;
+	case ERROR_TOO_MANY_OPEN_FILES: error = EMFILE; break;
+	case ERROR_UNRECOGNIZED_MEDIA: error = ENXIO; break;
+	case ERROR_UNRECOGNIZED_VOLUME: error = ENODEV; break;
+	case ERROR_WAIT_NO_CHILDREN: error = ECHILD; break;
+	case ERROR_WRITE_FAULT: error = EIO; break;
+	case ERROR_WRITE_PROTECT: error = EROFS; break;
+	}
+	return error;
+}
+
 #undef open
 int mingw_open (const char *filename, int oflags, ...)
 {
@@ -1005,3 +1118,24 @@ void mingw_open_html(const char *unixpath)
 	printf("Launching default browser to display HTML ...\n");
 	ShellExecute(NULL, "open", htmlpath, NULL, "\\", 0);
 }
+
+int link(const char *oldpath, const char *newpath)
+{
+	typedef BOOL WINAPI (*T)(const char*, const char*, LPSECURITY_ATTRIBUTES);
+	static T create_hard_link = NULL;
+	if (!create_hard_link) {
+		create_hard_link = (T) GetProcAddress(
+			GetModuleHandle("kernel32.dll"), "CreateHardLinkA");
+		if (!create_hard_link)
+			create_hard_link = (T)-1;
+	}
+	if (create_hard_link == (T)-1) {
+		errno = ENOSYS;
+		return -1;
+	}
+	if (!create_hard_link(newpath, oldpath, NULL)) {
+		errno = err_win_to_posix(GetLastError());
+		return -1;
+	}
+	return 0;
+}
diff --git a/compat/mingw.h b/compat/mingw.h
index cb9c4d4dd5..7e52f3607f 100644
--- a/compat/mingw.h
+++ b/compat/mingw.h
@@ -67,8 +67,6 @@ static inline int readlink(const char *path, char *buf, size_t bufsiz)
 { errno = ENOSYS; return -1; }
 static inline int symlink(const char *oldpath, const char *newpath)
 { errno = ENOSYS; return -1; }
-static inline int link(const char *oldpath, const char *newpath)
-{ errno = ENOSYS; return -1; }
 static inline int fchmod(int fildes, mode_t mode)
 { errno = ENOSYS; return -1; }
 static inline int fork(void)
@@ -134,6 +132,7 @@ int getpagesize(void);	/* defined in MinGW's libgcc.a */
 struct passwd *getpwuid(int uid);
 int setitimer(int type, struct itimerval *in, struct itimerval *out);
 int sigaction(int sig, struct sigaction *in, struct sigaction *out);
+int link(const char *oldpath, const char *newpath);
 
 /*
  * replacements of existing functions
@@ -170,7 +169,7 @@ int mingw_lstat(const char *file_name, struct stat *buf);
 int mingw_fstat(int fd, struct stat *buf);
 #define fstat mingw_fstat
 #define lstat mingw_lstat
-#define stat64(x,y) mingw_lstat(x,y)
+#define _stati64(x,y) mingw_lstat(x,y)
 
 int mingw_utime(const char *file_name, const struct utimbuf *times);
 #define utime mingw_utime
diff --git a/connect.c b/connect.c
index 2f23ab3b87..7636bf976e 100644
--- a/connect.c
+++ b/connect.c
@@ -373,8 +373,6 @@ static void git_tcp_connect(int fd[2], char *host, int flags)
 
 
 static char *git_proxy_command;
-static const char *rhost_name;
-static int rhost_len;
 
 static int git_proxy_command_options(const char *var, const char *value,
 		void *cb)
@@ -383,6 +381,8 @@ static int git_proxy_command_options(const char *var, const char *value,
 		const char *for_pos;
 		int matchlen = -1;
 		int hostlen;
+		const char *rhost_name = cb;
+		int rhost_len = strlen(rhost_name);
 
 		if (git_proxy_command)
 			return 0;
@@ -426,11 +426,8 @@ static int git_proxy_command_options(const char *var, const char *value,
 
 static int git_use_proxy(const char *host)
 {
-	rhost_name = host;
-	rhost_len = strlen(host);
 	git_proxy_command = getenv("GIT_PROXY_COMMAND");
-	git_config(git_proxy_command_options, NULL);
-	rhost_name = NULL;
+	git_config(git_proxy_command_options, (void*)host);
 	return (git_proxy_command && *git_proxy_command);
 }
 
@@ -507,7 +504,7 @@ struct child_process *git_connect(int fd[2], const char *url_orig,
 				  const char *prog, int flags)
 {
 	char *url = xstrdup(url_orig);
-	char *host, *path = url;
+	char *host, *path;
 	char *end;
 	int c;
 	struct child_process *conn;
diff --git a/contrib/completion/git-completion.bash b/contrib/completion/git-completion.bash
index f234c34304..ed235f7596 100755
--- a/contrib/completion/git-completion.bash
+++ b/contrib/completion/git-completion.bash
@@ -387,6 +387,85 @@ __git_complete_revlist ()
 	esac
 }
 
+__git_complete_remote_or_refspec ()
+{
+	local cmd="${COMP_WORDS[1]}"
+	local cur="${COMP_WORDS[COMP_CWORD]}"
+	local i c=2 remote="" pfx="" lhs=1 no_complete_refspec=0
+	while [ $c -lt $COMP_CWORD ]; do
+		i="${COMP_WORDS[c]}"
+		case "$i" in
+		--all|--mirror) [ "$cmd" = "push" ] && no_complete_refspec=1 ;;
+		-*) ;;
+		*) remote="$i"; break ;;
+		esac
+		c=$((++c))
+	done
+	if [ -z "$remote" ]; then
+		__gitcomp "$(__git_remotes)"
+		return
+	fi
+	if [ $no_complete_refspec = 1 ]; then
+		COMPREPLY=()
+		return
+	fi
+	[ "$remote" = "." ] && remote=
+	case "$cur" in
+	*:*)
+		case "$COMP_WORDBREAKS" in
+		*:*) : great ;;
+		*)   pfx="${cur%%:*}:" ;;
+		esac
+		cur="${cur#*:}"
+		lhs=0
+		;;
+	+*)
+		pfx="+"
+		cur="${cur#+}"
+		;;
+	esac
+	case "$cmd" in
+	fetch)
+		if [ $lhs = 1 ]; then
+			__gitcomp "$(__git_refs2 "$remote")" "$pfx" "$cur"
+		else
+			__gitcomp "$(__git_refs)" "$pfx" "$cur"
+		fi
+		;;
+	pull)
+		if [ $lhs = 1 ]; then
+			__gitcomp "$(__git_refs "$remote")" "$pfx" "$cur"
+		else
+			__gitcomp "$(__git_refs)" "$pfx" "$cur"
+		fi
+		;;
+	push)
+		if [ $lhs = 1 ]; then
+			__gitcomp "$(__git_refs)" "$pfx" "$cur"
+		else
+			__gitcomp "$(__git_refs "$remote")" "$pfx" "$cur"
+		fi
+		;;
+	esac
+}
+
+__git_complete_strategy ()
+{
+	case "${COMP_WORDS[COMP_CWORD-1]}" in
+	-s|--strategy)
+		__gitcomp "$(__git_merge_strategies)"
+		return 0
+	esac
+	local cur="${COMP_WORDS[COMP_CWORD]}"
+	case "$cur" in
+	--strategy=*)
+		__gitcomp "$(__git_merge_strategies)" "" "${cur##--strategy=}"
+		return 0
+		;;
+	esac
+	return 1
+}
+
 __git_all_commands ()
 {
 	if [ -n "${__git_all_commandlist-}" ]; then
@@ -830,27 +909,21 @@ _git_diff ()
 	__git_complete_file
 }
 
+__git_fetch_options="
+	--quiet --verbose --append --upload-pack --force --keep --depth=
+	--tags --no-tags
+"
+
 _git_fetch ()
 {
 	local cur="${COMP_WORDS[COMP_CWORD]}"
-
-	if [ "$COMP_CWORD" = 2 ]; then
-		__gitcomp "$(__git_remotes)"
-	else
-		case "$cur" in
-		*:*)
-			local pfx=""
-			case "$COMP_WORDBREAKS" in
-			*:*) : great ;;
-			*)   pfx="${cur%%:*}:" ;;
-			esac
-			__gitcomp "$(__git_refs)" "$pfx" "${cur#*:}"
-			;;
-		*)
-			__gitcomp "$(__git_refs2 "${COMP_WORDS[2]}")"
-			;;
-		esac
-	fi
+	case "$cur" in
+	--*)
+		__gitcomp "$__git_fetch_options"
+		return
+		;;
+	esac
+	__git_complete_remote_or_refspec
 }
 
 _git_format_patch ()
@@ -1054,24 +1127,19 @@ _git_log ()
 	__git_complete_revlist
 }
 
+__git_merge_options="
+	--no-commit --no-stat --log --no-log --squash --strategy
+	--commit --stat --no-squash --ff --no-ff
+"
+
 _git_merge ()
 {
+	__git_complete_strategy && return
+
 	local cur="${COMP_WORDS[COMP_CWORD]}"
-	case "${COMP_WORDS[COMP_CWORD-1]}" in
-	-s|--strategy)
-		__gitcomp "$(__git_merge_strategies)"
-		return
-	esac
 	case "$cur" in
-	--strategy=*)
-		__gitcomp "$(__git_merge_strategies)" "" "${cur##--strategy=}"
-		return
-		;;
 	--*)
-		__gitcomp "
-			--no-commit --no-stat --log --no-log --squash --strategy
-			--commit --stat --no-squash --ff --no-ff
-			"
+		__gitcomp "$__git_merge_options"
 		return
 	esac
 	__gitcomp "$(__git_refs)"
@@ -1120,40 +1188,44 @@ _git_name_rev ()
 
 _git_pull ()
 {
-	local cur="${COMP_WORDS[COMP_CWORD]}"
+	__git_complete_strategy && return
 
-	if [ "$COMP_CWORD" = 2 ]; then
-		__gitcomp "$(__git_remotes)"
-	else
-		__gitcomp "$(__git_refs "${COMP_WORDS[2]}")"
-	fi
+	local cur="${COMP_WORDS[COMP_CWORD]}"
+	case "$cur" in
+	--*)
+		__gitcomp "
+			--rebase --no-rebase
+			$__git_merge_options
+			$__git_fetch_options
+		"
+		return
+		;;
+	esac
+	__git_complete_remote_or_refspec
 }
 
 _git_push ()
 {
 	local cur="${COMP_WORDS[COMP_CWORD]}"
-
-	if [ "$COMP_CWORD" = 2 ]; then
+	case "${COMP_WORDS[COMP_CWORD-1]}" in
+	--repo)
 		__gitcomp "$(__git_remotes)"
-	else
-		case "$cur" in
-		*:*)
-			local pfx=""
-			case "$COMP_WORDBREAKS" in
-			*:*) : great ;;
-			*)   pfx="${cur%%:*}:" ;;
-			esac
-
-			__gitcomp "$(__git_refs "${COMP_WORDS[2]}")" "$pfx" "${cur#*:}"
-			;;
-		+*)
-			__gitcomp "$(__git_refs)" + "${cur#+}"
-			;;
-		*)
-			__gitcomp "$(__git_refs)"
-			;;
-		esac
-	fi
+		return
+	esac
+	case "$cur" in
+	--repo=*)
+		__gitcomp "$(__git_remotes)" "" "${cur##--repo=}"
+		return
+		;;
+	--*)
+		__gitcomp "
+			--all --mirror --tags --dry-run --force --verbose
+			--receive-pack= --repo=
+		"
+		return
+		;;
+	esac
+	__git_complete_remote_or_refspec
 }
 
 _git_rebase ()
@@ -1163,16 +1235,8 @@ _git_rebase ()
 		__gitcomp "--continue --skip --abort"
 		return
 	fi
-	case "${COMP_WORDS[COMP_CWORD-1]}" in
-	-s|--strategy)
-		__gitcomp "$(__git_merge_strategies)"
-		return
-	esac
+	__git_complete_strategy && return
 	case "$cur" in
-	--strategy=*)
-		__gitcomp "$(__git_merge_strategies)" "" "${cur##--strategy=}"
-		return
-		;;
 	--*)
 		__gitcomp "--onto --merge --strategy --interactive"
 		return
@@ -1452,7 +1516,7 @@ _git_config ()
 
 _git_remote ()
 {
-	local subcommands="add rename rm show prune update"
+	local subcommands="add rename rm show prune update set-head"
 	local subcommand="$(__git_find_subcommand "$subcommands")"
 	if [ -z "$subcommand" ]; then
 		__gitcomp "$subcommands"
diff --git a/contrib/difftool/git-difftool b/contrib/difftool/git-difftool
index 0cda3d2eea..0deda3a0e4 100755
--- a/contrib/difftool/git-difftool
+++ b/contrib/difftool/git-difftool
@@ -4,7 +4,7 @@
 # This is a wrapper around the GIT_EXTERNAL_DIFF-compatible
 # git-difftool-helper script.  This script exports
 # GIT_EXTERNAL_DIFF and GIT_PAGER for use by git, and
-# GIT_DIFFTOOL_NO_PROMPT and GIT_MERGE_TOOL for use by git-difftool-helper.
+# GIT_DIFFTOOL_NO_PROMPT and GIT_DIFF_TOOL for use by git-difftool-helper.
 # Any arguments that are unknown to this script are forwarded to 'git diff'.
 
 use strict;
@@ -49,12 +49,12 @@ sub generate_command
 		}
 		if ($arg eq '-t' or $arg eq '--tool') {
 			usage() if $#ARGV <= $idx;
-			$ENV{GIT_MERGE_TOOL} = $ARGV[$idx + 1];
+			$ENV{GIT_DIFF_TOOL} = $ARGV[$idx + 1];
 			$skip_next = 1;
 			next;
 		}
 		if ($arg =~ /^--tool=/) {
-			$ENV{GIT_MERGE_TOOL} = substr($arg, 7);
+			$ENV{GIT_DIFF_TOOL} = substr($arg, 7);
 			next;
 		}
 		if ($arg eq '--no-prompt') {
diff --git a/contrib/difftool/git-difftool-helper b/contrib/difftool/git-difftool-helper
index db3af6a833..9c0a13452a 100755
--- a/contrib/difftool/git-difftool-helper
+++ b/contrib/difftool/git-difftool-helper
@@ -128,8 +128,10 @@ launch_merge_tool () {
 	cleanup_temp_files
 }
 
-# Verifies that mergetool.<tool>.cmd exists
+# Verifies that (difftool|mergetool).<tool>.cmd exists
 valid_custom_tool() {
+	merge_tool_cmd="$(git config difftool.$1.cmd)"
+	test -z "$merge_tool_cmd" &&
 	merge_tool_cmd="$(git config mergetool.$1.cmd)"
 	test -n "$merge_tool_cmd"
 }
@@ -150,8 +152,11 @@ valid_tool() {
 }
 
 # Sets up the merge_tool_path variable.
-# This handles the mergetool.<tool>.path configuration.
+# This handles the difftool.<tool>.path configuration.
+# This also falls back to mergetool defaults.
 init_merge_tool_path() {
+	merge_tool_path=$(git config difftool."$1".path)
+	test -z "$merge_tool_path" &&
 	merge_tool_path=$(git config mergetool."$1".path)
 	if test -z "$merge_tool_path"; then
 		case "$1" in
@@ -165,15 +170,19 @@ init_merge_tool_path() {
 	fi
 }
 
-# Allow the GIT_MERGE_TOOL variable to provide a default value
+# Allow GIT_DIFF_TOOL and GIT_MERGE_TOOL to provide default values
 test -n "$GIT_MERGE_TOOL" && merge_tool="$GIT_MERGE_TOOL"
+test -n "$GIT_DIFF_TOOL" && merge_tool="$GIT_DIFF_TOOL"
 
-# If not merge tool was specified then use the merge.tool
+# If merge tool was not specified then use the diff.tool
 # configuration variable.  If that's invalid then reset merge_tool.
+# Fallback to merge.tool.
 if test -z "$merge_tool"; then
+	merge_tool=$(git config diff.tool)
+	test -z "$merge_tool" &&
 	merge_tool=$(git config merge.tool)
 	if test -n "$merge_tool" && ! valid_tool "$merge_tool"; then
-		echo >&2 "git config option merge.tool set to unknown tool: $merge_tool"
+		echo >&2 "git config option diff.tool set to unknown tool: $merge_tool"
 		echo >&2 "Resetting to default..."
 		unset merge_tool
 	fi
diff --git a/contrib/difftool/git-difftool.txt b/contrib/difftool/git-difftool.txt
index 6e2610cda6..2b7bc03ec3 100644
--- a/contrib/difftool/git-difftool.txt
+++ b/contrib/difftool/git-difftool.txt
@@ -32,23 +32,23 @@ OPTIONS
 	vimdiff, gvimdiff, ecmerge, and opendiff
 +
 If a merge resolution program is not specified, 'git-difftool'
-will use the configuration variable `merge.tool`.  If the
-configuration variable `merge.tool` is not set, 'git difftool'
+will use the configuration variable `diff.tool`.  If the
+configuration variable `diff.tool` is not set, 'git-difftool'
 will pick a suitable default.
 +
 You can explicitly provide a full path to the tool by setting the
-configuration variable `mergetool.<tool>.path`. For example, you
+configuration variable `difftool.<tool>.path`. For example, you
 can configure the absolute path to kdiff3 by setting
-`mergetool.kdiff3.path`. Otherwise, 'git-difftool' assumes the
+`difftool.kdiff3.path`. Otherwise, 'git-difftool' assumes the
 tool is available in PATH.
 +
 Instead of running one of the known merge tool programs,
 'git-difftool' can be customized to run an alternative program
 by specifying the command line to invoke in a configuration
-variable `mergetool.<tool>.cmd`.
+variable `difftool.<tool>.cmd`.
 +
 When 'git-difftool' is invoked with this tool (either through the
-`-t` or `--tool` option or the `merge.tool` configuration variable)
+`-t` or `--tool` option or the `diff.tool` configuration variable)
 the configured command line will be invoked with the following
 variables available: `$LOCAL` is set to the name of the temporary
 file containing the contents of the diff pre-image and `$REMOTE`
@@ -61,24 +61,24 @@ with custom merge tool commands and has the same value as `$LOCAL`.
 
 CONFIG VARIABLES
 ----------------
-merge.tool::
-	The default merge tool to use.
-+
-See the `--tool=<tool>` option above for more details.
+'git-difftool' falls back to 'git-mergetool' config variables when the
+difftool equivalents have not been defined.
 
-merge.keepBackup::
-	The original, unedited file content can be saved to a file with
-	a `.orig` extension.  Defaults to `true` (i.e. keep the backup files).
+diff.tool::
+	The default merge tool to use.
 
-mergetool.<tool>.path::
+difftool.<tool>.path::
 	Override the path for the given tool.  This is useful in case
 	your tool is not in the PATH.
 
-mergetool.<tool>.cmd::
+difftool.<tool>.cmd::
 	Specify the command to invoke the specified merge tool.
 +
 See the `--tool=<tool>` option above for more details.
 
+merge.keepBackup::
+	The original, unedited file content can be saved to a file with
+	a `.orig` extension.  Defaults to `true` (i.e. keep the backup files).
 
 SEE ALSO
 --------
diff --git a/contrib/fast-import/git-p4 b/contrib/fast-import/git-p4
index 3832f60225..342529db30 100755
--- a/contrib/fast-import/git-p4
+++ b/contrib/fast-import/git-p4
@@ -1142,7 +1142,7 @@ class P4Sync(Command):
 
         s = ''
         for (key, val) in self.users.items():
-            s += "%s\t%s\n" % (key, val)
+	    s += "%s\t%s\n" % (key.expandtabs(1), val.expandtabs(1))
 
         open(self.getUserCacheFilename(), "wb").write(s)
         self.userMapFromPerforceServer = True
diff --git a/diff-lib.c b/diff-lib.c
index 79d0606834..a310fb2ad0 100644
--- a/diff-lib.c
+++ b/diff-lib.c
@@ -31,7 +31,7 @@ static int check_removed(const struct cache_entry *ce, struct stat *st)
 			return -1;
 		return 1;
 	}
-	if (has_symlink_leading_path(ce_namelen(ce), ce->name))
+	if (has_symlink_leading_path(ce->name, ce_namelen(ce)))
 		return 1;
 	if (S_ISDIR(st->st_mode)) {
 		unsigned char sub[20];
diff --git a/diff-no-index.c b/diff-no-index.c
index 0a14268ba9..598687b50a 100644
--- a/diff-no-index.c
+++ b/diff-no-index.c
@@ -38,6 +38,10 @@ static int get_mode(const char *path, int *mode)
 
 	if (!path || !strcmp(path, "/dev/null"))
 		*mode = 0;
+#ifdef _WIN32
+	else if (!strcasecmp(path, "nul"))
+		*mode = 0;
+#endif
 	else if (!strcmp(path, "-"))
 		*mode = create_ce_mode(0666);
 	else if (lstat(path, &st))
diff --git a/diff.c b/diff.c
index 3feca1b173..75d9fab8f8 100644
--- a/diff.c
+++ b/diff.c
@@ -875,7 +875,7 @@ static void fill_print_name(struct diffstat_file *file)
 
 static void show_stats(struct diffstat_t* data, struct diff_options *options)
 {
-	int i, len, add, del, total, adds = 0, dels = 0;
+	int i, len, add, del, adds = 0, dels = 0;
 	int max_change = 0, max_len = 0;
 	int total_files = data->nr;
 	int width, name_width;
@@ -978,14 +978,12 @@ static void show_stats(struct diffstat_t* data, struct diff_options *options)
 		 */
 		add = added;
 		del = deleted;
-		total = add + del;
 		adds += add;
 		dels += del;
 
 		if (width <= max_change) {
 			add = scale_linear(add, width, max_change);
 			del = scale_linear(del, width, max_change);
-			total = add + del;
 		}
 		show_name(options->file, prefix, name, len, reset, set);
 		fprintf(options->file, "%5d%s", added + deleted,
@@ -1783,7 +1781,7 @@ static int reuse_worktree_file(const char *name, const unsigned char *sha1, int
 	 * objects however would tend to be slower as they need
 	 * to be individually opened and inflated.
 	 */
-	if (!FAST_WORKING_DIRECTORY && !want_file && has_sha1_pack(sha1, NULL))
+	if (!FAST_WORKING_DIRECTORY && !want_file && has_sha1_pack(sha1))
 		return 0;
 
 	len = strlen(name);
diff --git a/diffcore-break.c b/diffcore-break.c
index 31cdcfe8bc..d7097bb576 100644
--- a/diffcore-break.c
+++ b/diffcore-break.c
@@ -45,7 +45,7 @@ static int should_break(struct diff_filespec *src,
 	 * The value we return is 1 if we want the pair to be broken,
 	 * or 0 if we do not.
 	 */
-	unsigned long delta_size, base_size, max_size;
+	unsigned long delta_size, max_size;
 	unsigned long src_copied, literal_added, src_removed;
 
 	*merge_score_p = 0; /* assume no deletion --- "do not break"
@@ -64,7 +64,6 @@ static int should_break(struct diff_filespec *src,
 	if (diff_populate_filespec(src, 0) || diff_populate_filespec(dst, 0))
 		return 0; /* error but caught downstream */
 
-	base_size = ((src->size < dst->size) ? src->size : dst->size);
 	max_size = ((src->size > dst->size) ? src->size : dst->size);
 	if (max_size < MINIMUM_BREAK_SIZE)
 		return 0; /* we do not break too small filepair */
diff --git a/diffcore-pickaxe.c b/diffcore-pickaxe.c
index af9fffe6e8..d0ef839700 100644
--- a/diffcore-pickaxe.c
+++ b/diffcore-pickaxe.c
@@ -10,7 +10,7 @@ static unsigned int contains(struct diff_filespec *one,
 			     regex_t *regexp)
 {
 	unsigned int cnt;
-	unsigned long offset, sz;
+	unsigned long sz;
 	const char *data;
 	if (diff_populate_filespec(one, 0))
 		return 0;
@@ -25,23 +25,23 @@ static unsigned int contains(struct diff_filespec *one,
 		regmatch_t regmatch;
 		int flags = 0;
 
+		assert(data[sz] == '\0');
 		while (*data && !regexec(regexp, data, 1, &regmatch, flags)) {
 			flags |= REG_NOTBOL;
-			data += regmatch.rm_so;
-			if (*data) data++;
+			data += regmatch.rm_eo;
+			if (*data && regmatch.rm_so == regmatch.rm_eo)
+				data++;
 			cnt++;
 		}
 
 	} else { /* Classic exact string match */
-		/* Yes, I've heard of strstr(), but the thing is *data may
-		 * not be NUL terminated.  Sue me.
-		 */
-		for (offset = 0; offset + len <= sz; offset++) {
-			/* we count non-overlapping occurrences of needle */
-			if (!memcmp(needle, data + offset, len)) {
-				offset += len - 1;
-				cnt++;
-			}
+		while (sz) {
+			const char *found = memmem(data, sz, needle, len);
+			if (!found)
+				break;
+			sz -= found - data + len;
+			data = found + len;
+			cnt++;
 		}
 	}
 	diff_free_filespec_data(one);
diff --git a/dir.c b/dir.c
index 2245749b3f..371bcf7cfb 100644
--- a/dir.c
+++ b/dir.c
@@ -720,7 +720,7 @@ int read_directory(struct dir_struct *dir, const char *path, const char *base, i
 {
 	struct path_simplify *simplify;
 
-	if (has_symlink_leading_path(strlen(path), path))
+	if (has_symlink_leading_path(path, strlen(path)))
 		return dir->nr;
 
 	simplify = create_simplify(pathspec);
diff --git a/entry.c b/entry.c
index 05aa58d348..5daacc2fe5 100644
--- a/entry.c
+++ b/entry.c
@@ -2,15 +2,19 @@
 #include "blob.h"
 #include "dir.h"
 
-static void create_directories(const char *path, const struct checkout *state)
+static void create_directories(const char *path, int path_len,
+			       const struct checkout *state)
 {
-	int len = strlen(path);
-	char *buf = xmalloc(len + 1);
-	const char *slash = path;
-
-	while ((slash = strchr(slash+1, '/')) != NULL) {
-		len = slash - path;
-		memcpy(buf, path, len);
+	char *buf = xmalloc(path_len + 1);
+	int len = 0;
+
+	while (len < path_len) {
+		do {
+			buf[len] = path[len];
+			len++;
+		} while (len < path_len && path[len] != '/');
+		if (len >= path_len)
+			break;
 		buf[len] = 0;
 
 		/*
@@ -20,7 +24,7 @@ static void create_directories(const char *path, const struct checkout *state)
 		 * we test the path components of the prefix with the
 		 * stat() function instead of the lstat() function.
 		 */
-		if (has_dirs_only_path(len, buf, state->base_dir_len))
+		if (has_dirs_only_path(buf, len, state->base_dir_len))
 			continue; /* ok, it is already a directory. */
 
 		/*
@@ -74,7 +78,7 @@ static int create_file(const char *path, unsigned int mode)
 	return open(path, O_WRONLY | O_CREAT | O_EXCL, mode);
 }
 
-static void *read_blob_entry(struct cache_entry *ce, const char *path, unsigned long *size)
+static void *read_blob_entry(struct cache_entry *ce, unsigned long *size)
 {
 	enum object_type type;
 	void *new = read_sha1_file(ce->sha1, &type, size);
@@ -89,36 +93,52 @@ static void *read_blob_entry(struct cache_entry *ce, const char *path, unsigned
 
 static int write_entry(struct cache_entry *ce, char *path, const struct checkout *state, int to_tempfile)
 {
-	int fd;
-	long wrote;
-
-	switch (ce->ce_mode & S_IFMT) {
-		char *new;
-		struct strbuf buf;
-		unsigned long size;
+	unsigned int ce_mode_s_ifmt = ce->ce_mode & S_IFMT;
+	int fd, ret, fstat_done = 0;
+	char *new;
+	struct strbuf buf = STRBUF_INIT;
+	unsigned long size;
+	size_t wrote, newsize = 0;
+	struct stat st;
 
+	switch (ce_mode_s_ifmt) {
 	case S_IFREG:
-		new = read_blob_entry(ce, path, &size);
+	case S_IFLNK:
+		new = read_blob_entry(ce, &size);
 		if (!new)
 			return error("git checkout-index: unable to read sha1 file of %s (%s)",
 				path, sha1_to_hex(ce->sha1));
 
+		if (ce_mode_s_ifmt == S_IFLNK && has_symlinks && !to_tempfile) {
+			ret = symlink(new, path);
+			free(new);
+			if (ret)
+				return error("git checkout-index: unable to create symlink %s (%s)",
+					     path, strerror(errno));
+			break;
+		}
+
 		/*
 		 * Convert from git internal format to working tree format
 		 */
-		strbuf_init(&buf, 0);
-		if (convert_to_working_tree(ce->name, new, size, &buf)) {
-			size_t newsize = 0;
+		if (ce_mode_s_ifmt == S_IFREG &&
+		    convert_to_working_tree(ce->name, new, size, &buf)) {
 			free(new);
 			new = strbuf_detach(&buf, &newsize);
 			size = newsize;
 		}
 
 		if (to_tempfile) {
-			strcpy(path, ".merge_file_XXXXXX");
+			if (ce_mode_s_ifmt == S_IFREG)
+				strcpy(path, ".merge_file_XXXXXX");
+			else
+				strcpy(path, ".merge_link_XXXXXX");
 			fd = mkstemp(path);
-		} else
+		} else if (ce_mode_s_ifmt == S_IFREG) {
 			fd = create_file(path, ce->ce_mode);
+		} else {
+			fd = create_file(path, 0666);
+		}
 		if (fd < 0) {
 			free(new);
 			return error("git checkout-index: unable to create file %s (%s)",
@@ -126,41 +146,16 @@ static int write_entry(struct cache_entry *ce, char *path, const struct checkout
 		}
 
 		wrote = write_in_full(fd, new, size);
+		/* use fstat() only when path == ce->name */
+		if (state->refresh_cache && !to_tempfile && !state->base_dir_len) {
+			fstat(fd, &st);
+			fstat_done = 1;
+		}
 		close(fd);
 		free(new);
 		if (wrote != size)
 			return error("git checkout-index: unable to write file %s", path);
 		break;
-	case S_IFLNK:
-		new = read_blob_entry(ce, path, &size);
-		if (!new)
-			return error("git checkout-index: unable to read sha1 file of %s (%s)",
-				path, sha1_to_hex(ce->sha1));
-		if (to_tempfile || !has_symlinks) {
-			if (to_tempfile) {
-				strcpy(path, ".merge_link_XXXXXX");
-				fd = mkstemp(path);
-			} else
-				fd = create_file(path, 0666);
-			if (fd < 0) {
-				free(new);
-				return error("git checkout-index: unable to create "
-						 "file %s (%s)", path, strerror(errno));
-			}
-			wrote = write_in_full(fd, new, size);
-			close(fd);
-			free(new);
-			if (wrote != size)
-				return error("git checkout-index: unable to write file %s",
-					path);
-		} else {
-			wrote = symlink(new, path);
-			free(new);
-			if (wrote)
-				return error("git checkout-index: unable to create "
-						 "symlink %s (%s)", path, strerror(errno));
-		}
-		break;
 	case S_IFGITLINK:
 		if (to_tempfile)
 			return error("git checkout-index: cannot create temporary subproject %s", path);
@@ -172,8 +167,8 @@ static int write_entry(struct cache_entry *ce, char *path, const struct checkout
 	}
 
 	if (state->refresh_cache) {
-		struct stat st;
-		lstat(ce->name, &st);
+		if (!fstat_done)
+			lstat(ce->name, &st);
 		fill_stat_cache_info(ce, &st);
 	}
 	return 0;
@@ -190,6 +185,7 @@ int checkout_entry(struct cache_entry *ce, const struct checkout *state, char *t
 
 	memcpy(path, state->base_dir, len);
 	strcpy(path + len, ce->name);
+	len += ce_namelen(ce);
 
 	if (!lstat(path, &st)) {
 		unsigned changed = ce_match_stat(ce, &st, CE_MATCH_IGNORE_VALID);
@@ -218,6 +214,6 @@ int checkout_entry(struct cache_entry *ce, const struct checkout *state, char *t
 			return error("unable to unlink old '%s' (%s)", path, strerror(errno));
 	} else if (state->not_new)
 		return 0;
-	create_directories(path, state);
+	create_directories(path, len, state);
 	return write_entry(ce, path, state, 0);
 }
diff --git a/fast-import.c b/fast-import.c
index 3748ddf48d..beeac0d004 100644
--- a/fast-import.c
+++ b/fast-import.c
@@ -1745,21 +1745,19 @@ static void parse_data(struct strbuf *sb)
 static int validate_raw_date(const char *src, char *result, int maxlen)
 {
 	const char *orig_src = src;
-	char *endp, sign;
-	unsigned long date;
+	char *endp;
 
 	errno = 0;
 
-	date = strtoul(src, &endp, 10);
+	strtoul(src, &endp, 10);
 	if (errno || endp == src || *endp != ' ')
 		return -1;
 
 	src = endp + 1;
 	if (*src != '-' && *src != '+')
 		return -1;
-	sign = *src;
 
-	date = strtoul(src + 1, &endp, 10);
+	strtoul(src + 1, &endp, 10);
 	if (errno || endp == src || *endp || (endp - orig_src) >= maxlen)
 		return -1;
 
diff --git a/fsck.c b/fsck.c
index 97f76c5815..511b82cba9 100644
--- a/fsck.c
+++ b/fsck.c
@@ -148,20 +148,17 @@ static int fsck_tree(struct tree *item, int strict, fsck_error error_func)
 	struct tree_desc desc;
 	unsigned o_mode;
 	const char *o_name;
-	const unsigned char *o_sha1;
 
 	init_tree_desc(&desc, item->buffer, item->size);
 
 	o_mode = 0;
 	o_name = NULL;
-	o_sha1 = NULL;
 
 	while (desc.size) {
 		unsigned mode;
 		const char *name;
-		const unsigned char *sha1;
 
-		sha1 = tree_entry_extract(&desc, &name, &mode);
+		tree_entry_extract(&desc, &name, &mode);
 
 		if (strchr(name, '/'))
 			has_full_path = 1;
@@ -207,7 +204,6 @@ static int fsck_tree(struct tree *item, int strict, fsck_error error_func)
 
 		o_mode = mode;
 		o_name = name;
-		o_sha1 = sha1;
 	}
 
 	retval = 0;
diff --git a/git-compat-util.h b/git-compat-util.h
index dcf4127750..19062534a1 100644
--- a/git-compat-util.h
+++ b/git-compat-util.h
@@ -319,6 +319,7 @@ static inline int has_extension(const char *filename, const char *ext)
 }
 
 /* Sane ctype - no locale, and works with signed chars */
+#undef isascii
 #undef isspace
 #undef isdigit
 #undef isalpha
@@ -332,6 +333,7 @@ extern unsigned char sane_ctype[256];
 #define GIT_GLOB_SPECIAL 0x08
 #define GIT_REGEX_SPECIAL 0x10
 #define sane_istest(x,mask) ((sane_ctype[(unsigned char)(x)] & (mask)) != 0)
+#define isascii(x) (((x) & ~0x7f) == 0)
 #define isspace(x) sane_istest(x,GIT_SPACE)
 #define isdigit(x) sane_istest(x,GIT_DIGIT)
 #define isalpha(x) sane_istest(x,GIT_ALPHA)
@@ -386,4 +388,18 @@ void git_qsort(void *base, size_t nmemb, size_t size,
 # define FORCE_DIR_SET_GID 0
 #endif
 
+#ifdef NO_NSEC
+#undef USE_NSEC
+#define ST_CTIME_NSEC(st) 0
+#define ST_MTIME_NSEC(st) 0
+#else
+#ifdef USE_ST_TIMESPEC
+#define ST_CTIME_NSEC(st) ((unsigned int)((st).st_ctimespec.tv_nsec))
+#define ST_MTIME_NSEC(st) ((unsigned int)((st).st_mtimespec.tv_nsec))
+#else
+#define ST_CTIME_NSEC(st) ((unsigned int)((st).st_ctim.tv_nsec))
+#define ST_MTIME_NSEC(st) ((unsigned int)((st).st_mtim.tv_nsec))
+#endif
+#endif
+
 #endif
diff --git a/git-instaweb.sh b/git-instaweb.sh
index 0843372b57..5f4419b69b 100755
--- a/git-instaweb.sh
+++ b/git-instaweb.sh
@@ -49,7 +49,7 @@ resolve_full_httpd () {
 	esac
 
 	httpd_only="$(echo $httpd | cut -f1 -d' ')"
-	if case "$httpd_only" in /*) : ;; *) which $httpd_only >/dev/null;; esac
+	if case "$httpd_only" in /*) : ;; *) which $httpd_only >/dev/null 2>&1;; esac
 	then
 		full_httpd=$httpd
 	else
@@ -179,11 +179,74 @@ lighttpd_conf () {
 	cat > "$conf" <<EOF
 server.document-root = "$fqgitdir/gitweb"
 server.port = $port
-server.modules = ( "mod_cgi" )
+server.modules = ( "mod_setenv", "mod_cgi" )
 server.indexfiles = ( "gitweb.cgi" )
 server.pid-file = "$fqgitdir/pid"
+server.errorlog = "$fqgitdir/gitweb/error.log"
+
+# to enable, add "mod_access", "mod_accesslog" to server.modules
+# variable above and uncomment this
+#accesslog.filename = "$fqgitdir/gitweb/access.log"
+
+setenv.add-environment = ( "PATH" => "/usr/local/bin:/usr/bin:/bin" )
+
 cgi.assign = ( ".cgi" => "" )
-mimetype.assign = ( ".css" => "text/css" )
+
+# mimetype mapping
+mimetype.assign             = (
+  ".pdf"          =>      "application/pdf",
+  ".sig"          =>      "application/pgp-signature",
+  ".spl"          =>      "application/futuresplash",
+  ".class"        =>      "application/octet-stream",
+  ".ps"           =>      "application/postscript",
+  ".torrent"      =>      "application/x-bittorrent",
+  ".dvi"          =>      "application/x-dvi",
+  ".gz"           =>      "application/x-gzip",
+  ".pac"          =>      "application/x-ns-proxy-autoconfig",
+  ".swf"          =>      "application/x-shockwave-flash",
+  ".tar.gz"       =>      "application/x-tgz",
+  ".tgz"          =>      "application/x-tgz",
+  ".tar"          =>      "application/x-tar",
+  ".zip"          =>      "application/zip",
+  ".mp3"          =>      "audio/mpeg",
+  ".m3u"          =>      "audio/x-mpegurl",
+  ".wma"          =>      "audio/x-ms-wma",
+  ".wax"          =>      "audio/x-ms-wax",
+  ".ogg"          =>      "application/ogg",
+  ".wav"          =>      "audio/x-wav",
+  ".gif"          =>      "image/gif",
+  ".jpg"          =>      "image/jpeg",
+  ".jpeg"         =>      "image/jpeg",
+  ".png"          =>      "image/png",
+  ".xbm"          =>      "image/x-xbitmap",
+  ".xpm"          =>      "image/x-xpixmap",
+  ".xwd"          =>      "image/x-xwindowdump",
+  ".css"          =>      "text/css",
+  ".html"         =>      "text/html",
+  ".htm"          =>      "text/html",
+  ".js"           =>      "text/javascript",
+  ".asc"          =>      "text/plain",
+  ".c"            =>      "text/plain",
+  ".cpp"          =>      "text/plain",
+  ".log"          =>      "text/plain",
+  ".conf"         =>      "text/plain",
+  ".text"         =>      "text/plain",
+  ".txt"          =>      "text/plain",
+  ".dtd"          =>      "text/xml",
+  ".xml"          =>      "text/xml",
+  ".mpeg"         =>      "video/mpeg",
+  ".mpg"          =>      "video/mpeg",
+  ".mov"          =>      "video/quicktime",
+  ".qt"           =>      "video/quicktime",
+  ".avi"          =>      "video/x-msvideo",
+  ".asf"          =>      "video/x-ms-asf",
+  ".asx"          =>      "video/x-ms-asf",
+  ".wmv"          =>      "video/x-ms-wmv",
+  ".bz2"          =>      "application/x-bzip",
+  ".tbz"          =>      "application/x-bzip-compressed-tar",
+  ".tar.bz2"      =>      "application/x-bzip-compressed-tar",
+  ""              =>      "text/plain"
+ )
 EOF
 	test x"$local" = xtrue && echo 'server.bind = "127.0.0.1"' >> "$conf"
 }
diff --git a/git-pull.sh b/git-pull.sh
index 25adddfddf..8a26763206 100755
--- a/git-pull.sh
+++ b/git-pull.sh
@@ -16,7 +16,7 @@ cd_to_toplevel
 test -z "$(git ls-files -u)" ||
 	die "You are in the middle of a conflicted merge."
 
-strategy_args= no_stat= no_commit= squash= no_ff= log_arg= verbosity=
+strategy_args= diffstat= no_commit= squash= no_ff= log_arg= verbosity=
 curr_branch=$(git symbolic-ref -q HEAD)
 curr_branch_short=$(echo "$curr_branch" | sed "s|refs/heads/||")
 rebase=$(git config --bool branch.$curr_branch_short.rebase)
@@ -28,9 +28,9 @@ do
 	-v|--verbose)
 		verbosity="$verbosity -v" ;;
 	-n|--no-stat|--no-summary)
-		no_stat=-n ;;
+		diffstat=--no-stat ;;
 	--stat|--summary)
-		no_stat=$1 ;;
+		diffstat=--stat ;;
 	--log|--no-log)
 		log_arg=$1 ;;
 	--no-c|--no-co|--no-com|--no-comm|--no-commi|--no-commit)
@@ -188,7 +188,7 @@ fi
 
 merge_name=$(git fmt-merge-msg $log_arg <"$GIT_DIR/FETCH_HEAD") || exit
 test true = "$rebase" &&
-	exec git-rebase $strategy_args --onto $merge_head \
+	exec git-rebase $diffstat $strategy_args --onto $merge_head \
 	${oldremoteref:-$merge_head}
-exec git-merge $no_stat $no_commit $squash $no_ff $log_arg $strategy_args \
+exec git-merge $diffstat $no_commit $squash $no_ff $log_arg $strategy_args \
 	"$merge_name" HEAD $merge_head $verbosity
diff --git a/git-rebase.sh b/git-rebase.sh
index c2a9b1fbe0..d38ab0b83f 100755
--- a/git-rebase.sh
+++ b/git-rebase.sh
@@ -46,6 +46,7 @@ do_merge=
 dotest="$GIT_DIR"/rebase-merge
 prec=4
 verbose=
+diffstat=$(git config --bool rebase.stat)
 git_am_opt=
 rebase_root=
 force_rebase=
@@ -290,8 +291,15 @@ do
 		esac
 		do_merge=t
 		;;
+	-n|--no-stat)
+		diffstat=
+		;;
+	--stat)
+		diffstat=t
+		;;
 	-v|--verbose)
 		verbose=t
+		diffstat=t
 		;;
 	--whitespace=*)
 		git_am_opt="$git_am_opt $1"
@@ -440,18 +448,21 @@ then
 	fi
 fi
 
-if test -n "$verbose"
-then
-	echo "Changes from $mb to $onto:"
-	# We want color (if set), but no pager
-	GIT_PAGER='' git diff --stat --summary "$mb" "$onto"
-fi
-
 # Detach HEAD and reset the tree
 echo "First, rewinding head to replay your work on top of it..."
 git checkout -q "$onto^0" || die "could not detach HEAD"
 git update-ref ORIG_HEAD $branch
 
+if test -n "$diffstat"
+then
+	if test -n "$verbose"
+	then
+		echo "Changes from $mb to $onto:"
+	fi
+	# We want color (if set), but no pager
+	GIT_PAGER='' git diff --stat --summary "$mb" "$onto"
+fi
+
 # If the $onto is a proper descendant of the tip of the branch, then
 # we just fast forwarded.
 if test "$mb" = "$branch"
diff --git a/git-repack.sh b/git-repack.sh
index be6db5e805..0144c2d7b9 100755
--- a/git-repack.sh
+++ b/git-repack.sh
@@ -60,6 +60,7 @@ case ",$all_into_one," in
 	args='--unpacked --incremental'
 	;;
 ,t,)
+	args= existing=
 	if [ -d "$PACKDIR" ]; then
 		for e in `cd "$PACKDIR" && find . -type f -name '*.pack' \
 			| sed -e 's/^\.\///' -e 's/\.pack$//'`
@@ -67,10 +68,13 @@ case ",$all_into_one," in
 			if [ -e "$PACKDIR/$e.keep" ]; then
 				: keep
 			else
-				args="$args --unpacked=$e.pack"
 				existing="$existing $e"
 			fi
 		done
+		if test -n "$existing"
+		then
+			args="--kept-pack-only"
+		fi
 		if test -n "$args" -a -n "$unpack_unreachable" -a \
 			-n "$remove_redundant"
 		then
diff --git a/git-send-email.perl b/git-send-email.perl
index 57127aa823..546d2ebc0c 100755
--- a/git-send-email.perl
+++ b/git-send-email.perl
@@ -821,7 +821,7 @@ sub send_message
 Message-Id: $message_id
 X-Mailer: git-send-email $gitversion
 ";
-	if ($thread && $reply_to) {
+	if ($reply_to) {
 
 		$header .= "In-Reply-To: $reply_to\n";
 		$header .= "References: $references\n";
diff --git a/git-submodule.sh b/git-submodule.sh
index 204aab671e..0a27232b90 100755
--- a/git-submodule.sh
+++ b/git-submodule.sh
@@ -167,9 +167,18 @@ cmd_add()
 	;;
 	esac
 
-	# strip trailing slashes from path
-	path=$(echo "$path" | sed -e 's|/*$||')
-
+	# normalize path:
+	# multiple //; leading ./; /./; /../; trailing /
+	path=$(printf '%s/\n' "$path" |
+		sed -e '
+			s|//*|/|g
+			s|^\(\./\)*||
+			s|/\./|/|g
+			:start
+			s|\([^/]*\)/\.\./||
+			tstart
+			s|/*$||
+		')
 	git ls-files --error-unmatch "$path" > /dev/null 2>&1 &&
 	die "'$path' already exists in the index"
 
diff --git a/git-svn.perl b/git-svn.perl
index 959eb52f3f..8be6be00c6 100755
--- a/git-svn.perl
+++ b/git-svn.perl
@@ -2351,7 +2351,10 @@ sub match_paths {
 	if (my $path = $paths->{"/$self->{path}"}) {
 		return ($path->{action} eq 'D') ? 0 : 1;
 	}
-	$self->{path_regex} ||= qr/^\/\Q$self->{path}\E\//;
+	my $repos_root = $self->ra->{repos_root};
+	my $extended_path = $self->{url} . '/' . $self->{path};
+	$extended_path =~ s#^\Q$repos_root\E(/|$)##;
+	$self->{path_regex} ||= qr/^\/\Q$extended_path\E\//;
 	if (grep /$self->{path_regex}/, keys %$paths) {
 		return 1;
 	}
diff --git a/http-push.c b/http-push.c
index 30d2d34041..48e5f38fe0 100644
--- a/http-push.c
+++ b/http-push.c
@@ -816,7 +816,7 @@ static void finish_request(struct transfer_request *request)
 #ifdef USE_CURL_MULTI
 static int fill_active_slot(void *unused)
 {
-	struct transfer_request *request = request_queue_head;
+	struct transfer_request *request;
 
 	if (aborted)
 		return 0;
@@ -1792,21 +1792,8 @@ static int update_remote(unsigned char *sha1, struct remote_lock *lock)
 	return 1;
 }
 
-static struct ref *local_refs, **local_tail;
 static struct ref *remote_refs, **remote_tail;
 
-static int one_local_ref(const char *refname, const unsigned char *sha1, int flag, void *cb_data)
-{
-	struct ref *ref;
-	int len = strlen(refname) + 1;
-	ref = xcalloc(1, sizeof(*ref) + len);
-	hashcpy(ref->new_sha1, sha1);
-	memcpy(ref->name, refname, len);
-	*local_tail = ref;
-	local_tail = &ref->next;
-	return 0;
-}
-
 static void one_remote_ref(char *refname)
 {
 	struct ref *ref;
@@ -1839,12 +1826,6 @@ static void one_remote_ref(char *refname)
 	remote_tail = &ref->next;
 }
 
-static void get_local_heads(void)
-{
-	local_tail = &local_refs;
-	for_each_ref(one_local_ref, NULL);
-}
-
 static void get_dav_remote_heads(void)
 {
 	remote_tail = &remote_refs;
@@ -1862,55 +1843,6 @@ static int is_zero_sha1(const unsigned char *sha1)
 	return 1;
 }
 
-static void unmark_and_free(struct commit_list *list, unsigned int mark)
-{
-	while (list) {
-		struct commit_list *temp = list;
-		temp->item->object.flags &= ~mark;
-		list = temp->next;
-		free(temp);
-	}
-}
-
-static int ref_newer(const unsigned char *new_sha1,
-		     const unsigned char *old_sha1)
-{
-	struct object *o;
-	struct commit *old, *new;
-	struct commit_list *list, *used;
-	int found = 0;
-
-	/* Both new and old must be commit-ish and new is descendant of
-	 * old.  Otherwise we require --force.
-	 */
-	o = deref_tag(parse_object(old_sha1), NULL, 0);
-	if (!o || o->type != OBJ_COMMIT)
-		return 0;
-	old = (struct commit *) o;
-
-	o = deref_tag(parse_object(new_sha1), NULL, 0);
-	if (!o || o->type != OBJ_COMMIT)
-		return 0;
-	new = (struct commit *) o;
-
-	if (parse_commit(new) < 0)
-		return 0;
-
-	used = list = NULL;
-	commit_list_insert(new, &list);
-	while (list) {
-		new = pop_most_recent_commit(&list, TMP_MARK);
-		commit_list_insert(new, &used);
-		if (new == old) {
-			found = 1;
-			break;
-		}
-	}
-	unmark_and_free(list, TMP_MARK);
-	unmark_and_free(used, TMP_MARK);
-	return found;
-}
-
 static void add_remote_info_ref(struct remote_ls_ctx *ls)
 {
 	struct strbuf *buf = (struct strbuf *)ls->userData;
@@ -2195,7 +2127,7 @@ int main(int argc, char **argv)
 	int rc = 0;
 	int i;
 	int new_refs;
-	struct ref *ref;
+	struct ref *ref, *local_refs;
 	char *rewritten_url = NULL;
 
 	git_extract_argv0_path(argv[0]);
@@ -2302,7 +2234,7 @@ int main(int argc, char **argv)
 		fetch_indices();
 
 	/* Get a list of all local and remote heads to validate refspecs */
-	get_local_heads();
+	local_refs = get_local_heads();
 	fprintf(stderr, "Fetching remote heads...\n");
 	get_dav_remote_heads();
 
diff --git a/http.c b/http.c
index ee58799ca8..56f18f1b03 100644
--- a/http.c
+++ b/http.c
@@ -573,31 +573,21 @@ static inline int hex(int v)
 
 static char *quote_ref_url(const char *base, const char *ref)
 {
+	struct strbuf buf = STRBUF_INIT;
 	const char *cp;
-	char *dp, *qref;
-	int len, baselen, ch;
+	int ch;
 
-	baselen = strlen(base);
-	len = baselen + 2; /* '/' after base and terminating NUL */
-	for (cp = ref; (ch = *cp) != 0; cp++, len++)
+	strbuf_addstr(&buf, base);
+	if (buf.len && buf.buf[buf.len - 1] != '/' && *ref != '/')
+		strbuf_addstr(&buf, "/");
+
+	for (cp = ref; (ch = *cp) != 0; cp++)
 		if (needs_quote(ch))
-			len += 2; /* extra two hex plus replacement % */
-	qref = xmalloc(len);
-	memcpy(qref, base, baselen);
-	dp = qref + baselen;
-	*(dp++) = '/';
-	for (cp = ref; (ch = *cp) != 0; cp++) {
-		if (needs_quote(ch)) {
-			*dp++ = '%';
-			*dp++ = hex((ch >> 4) & 0xF);
-			*dp++ = hex(ch & 0xF);
-		}
+			strbuf_addf(&buf, "%%%02x", ch);
 		else
-			*dp++ = ch;
-	}
-	*dp = 0;
+			strbuf_addch(&buf, *cp);
 
-	return qref;
+	return strbuf_detach(&buf, NULL);
 }
 
 int http_fetch_ref(const char *base, struct ref *ref)
diff --git a/imap-send.c b/imap-send.c
index cb518eb613..8154cb2116 100644
--- a/imap-send.c
+++ b/imap-send.c
@@ -579,7 +579,7 @@ static struct imap_cmd *v_issue_imap_cmd(struct imap_store *ctx,
 			n = socket_write(&imap->buf.sock, cmd->cb.data, cmd->cb.dlen);
 			free(cmd->cb.data);
 			if (n != cmd->cb.dlen ||
-			    (n = socket_write(&imap->buf.sock, "\r\n", 2)) != 2) {
+			    socket_write(&imap->buf.sock, "\r\n", 2) != 2) {
 				free(cmd->cmd);
 				free(cmd);
 				return NULL;
diff --git a/index-pack.c b/index-pack.c
index 7fee872533..75468228d3 100644
--- a/index-pack.c
+++ b/index-pack.c
@@ -232,7 +232,7 @@ static void free_base_data(struct base_data *c)
 
 static void prune_base_data(struct base_data *retain)
 {
-	struct base_data *b = base_cache;
+	struct base_data *b;
 	for (b = base_cache;
 	     base_cache_used > delta_base_cache_limit && b;
 	     b = b->child) {
diff --git a/log-tree.c b/log-tree.c
index 84a74e544b..9565c184db 100644
--- a/log-tree.c
+++ b/log-tree.c
@@ -6,6 +6,7 @@
 #include "log-tree.h"
 #include "reflog-walk.h"
 #include "refs.h"
+#include "string-list.h"
 
 struct decoration name_decoration = { "object names" };
 
@@ -79,18 +80,18 @@ void show_decorations(struct rev_info *opt, struct commit *commit)
  */
 static int detect_any_signoff(char *letter, int size)
 {
-	char ch, *cp;
+	char *cp;
 	int seen_colon = 0;
 	int seen_at = 0;
 	int seen_name = 0;
 	int seen_head = 0;
 
 	cp = letter + size;
-	while (letter <= --cp && (ch = *cp) == '\n')
+	while (letter <= --cp && *cp == '\n')
 		continue;
 
 	while (letter <= cp) {
-		ch = *cp--;
+		char ch = *cp--;
 		if (ch == '\n')
 			break;
 
@@ -211,9 +212,13 @@ void log_write_email_headers(struct rev_info *opt, const char *name,
 		printf("Message-Id: <%s>\n", opt->message_id);
 		graph_show_oneline(opt->graph);
 	}
-	if (opt->ref_message_id) {
-		printf("In-Reply-To: <%s>\nReferences: <%s>\n",
-		       opt->ref_message_id, opt->ref_message_id);
+	if (opt->ref_message_ids && opt->ref_message_ids->nr > 0) {
+		int i, n;
+		n = opt->ref_message_ids->nr;
+		printf("In-Reply-To: <%s>\n", opt->ref_message_ids->items[n-1].string);
+		for (i = 0; i < n; i++)
+			printf("%s<%s>\n", (i > 0 ? "\t" : "References: "),
+			       opt->ref_message_ids->items[i].string);
 		graph_show_oneline(opt->graph);
 	}
 	if (opt->mime_boundary) {
diff --git a/merge-recursive.c b/merge-recursive.c
index ee853b990d..3e1bc3e07f 100644
--- a/merge-recursive.c
+++ b/merge-recursive.c
@@ -801,22 +801,19 @@ static int process_renames(struct merge_options *o,
 	}
 
 	for (i = 0, j = 0; i < a_renames->nr || j < b_renames->nr;) {
-		int compare;
 		char *src;
-		struct string_list *renames1, *renames2, *renames2Dst;
+		struct string_list *renames1, *renames2Dst;
 		struct rename *ren1 = NULL, *ren2 = NULL;
 		const char *branch1, *branch2;
 		const char *ren1_src, *ren1_dst;
 
 		if (i >= a_renames->nr) {
-			compare = 1;
 			ren2 = b_renames->items[j++].util;
 		} else if (j >= b_renames->nr) {
-			compare = -1;
 			ren1 = a_renames->items[i++].util;
 		} else {
-			compare = strcmp(a_renames->items[i].string,
-					b_renames->items[j].string);
+			int compare = strcmp(a_renames->items[i].string,
+					     b_renames->items[j].string);
 			if (compare <= 0)
 				ren1 = a_renames->items[i++].util;
 			if (compare >= 0)
@@ -826,14 +823,12 @@ static int process_renames(struct merge_options *o,
 		/* TODO: refactor, so that 1/2 are not needed */
 		if (ren1) {
 			renames1 = a_renames;
-			renames2 = b_renames;
 			renames2Dst = &b_by_dst;
 			branch1 = o->branch1;
 			branch2 = o->branch2;
 		} else {
 			struct rename *tmp;
 			renames1 = b_renames;
-			renames2 = a_renames;
 			renames2Dst = &a_by_dst;
 			branch1 = o->branch2;
 			branch2 = o->branch1;
diff --git a/parse-options.c b/parse-options.c
index 4c5d09dd25..cf71bcffd2 100644
--- a/parse-options.c
+++ b/parse-options.c
@@ -244,6 +244,9 @@ void parse_options_start(struct parse_opt_ctx_t *ctx,
 	ctx->out  = argv;
 	ctx->cpidx = ((flags & PARSE_OPT_KEEP_ARGV0) != 0);
 	ctx->flags = flags;
+	if ((flags & PARSE_OPT_KEEP_UNKNOWN) &&
+	    (flags & PARSE_OPT_STOP_AT_NON_OPTION))
+		die("STOP_AT_NON_OPTION and KEEP_UNKNOWN don't go together");
 }
 
 static int usage_with_options_internal(const char * const *,
@@ -253,6 +256,8 @@ int parse_options_step(struct parse_opt_ctx_t *ctx,
 		       const struct option *options,
 		       const char * const usagestr[])
 {
+	int internal_help = !(ctx->flags & PARSE_OPT_NO_INTERNAL_HELP);
+
 	/* we must reset ->opt, unknown short option leave it dangling */
 	ctx->opt = NULL;
 
@@ -268,18 +273,18 @@ int parse_options_step(struct parse_opt_ctx_t *ctx,
 
 		if (arg[1] != '-') {
 			ctx->opt = arg + 1;
-			if (*ctx->opt == 'h')
+			if (internal_help && *ctx->opt == 'h')
 				return parse_options_usage(usagestr, options);
 			switch (parse_short_opt(ctx, options)) {
 			case -1:
 				return parse_options_usage(usagestr, options);
 			case -2:
-				return PARSE_OPT_UNKNOWN;
+				goto unknown;
 			}
 			if (ctx->opt)
 				check_typos(arg + 1, options);
 			while (ctx->opt) {
-				if (*ctx->opt == 'h')
+				if (internal_help && *ctx->opt == 'h')
 					return parse_options_usage(usagestr, options);
 				switch (parse_short_opt(ctx, options)) {
 				case -1:
@@ -292,7 +297,7 @@ int parse_options_step(struct parse_opt_ctx_t *ctx,
 					 */
 					ctx->argv[0] = xstrdup(ctx->opt - 1);
 					*(char *)ctx->argv[0] = '-';
-					return PARSE_OPT_UNKNOWN;
+					goto unknown;
 				}
 			}
 			continue;
@@ -306,16 +311,22 @@ int parse_options_step(struct parse_opt_ctx_t *ctx,
 			break;
 		}
 
-		if (!strcmp(arg + 2, "help-all"))
+		if (internal_help && !strcmp(arg + 2, "help-all"))
 			return usage_with_options_internal(usagestr, options, 1);
-		if (!strcmp(arg + 2, "help"))
+		if (internal_help && !strcmp(arg + 2, "help"))
 			return parse_options_usage(usagestr, options);
 		switch (parse_long_opt(ctx, arg + 2, options)) {
 		case -1:
 			return parse_options_usage(usagestr, options);
 		case -2:
-			return PARSE_OPT_UNKNOWN;
+			goto unknown;
 		}
+		continue;
+unknown:
+		if (!(ctx->flags & PARSE_OPT_KEEP_UNKNOWN))
+			return PARSE_OPT_UNKNOWN;
+		ctx->out[ctx->cpidx++] = ctx->argv[0];
+		ctx->opt = NULL;
 	}
 	return PARSE_OPT_DONE;
 }
@@ -356,6 +367,9 @@ int parse_options(int argc, const char **argv, const struct option *options,
 int usage_with_options_internal(const char * const *usagestr,
 				const struct option *opts, int full)
 {
+	if (!usagestr)
+		return PARSE_OPT_HELP;
+
 	fprintf(stderr, "usage: %s\n", *usagestr++);
 	while (*usagestr && **usagestr)
 		fprintf(stderr, "   or: %s\n", *usagestr++);
diff --git a/parse-options.h b/parse-options.h
index 912290549b..f8ef1db128 100644
--- a/parse-options.h
+++ b/parse-options.h
@@ -21,6 +21,8 @@ enum parse_opt_flags {
 	PARSE_OPT_KEEP_DASHDASH = 1,
 	PARSE_OPT_STOP_AT_NON_OPTION = 2,
 	PARSE_OPT_KEEP_ARGV0 = 4,
+	PARSE_OPT_KEEP_UNKNOWN = 8,
+	PARSE_OPT_NO_INTERNAL_HELP = 16,
 };
 
 enum parse_opt_option_flags {
diff --git a/pretty.c b/pretty.c
index f49929479f..efa70245f1 100644
--- a/pretty.c
+++ b/pretty.c
@@ -83,8 +83,7 @@ static int get_one_line(const char *msg)
 /* High bit set, or ISO-2022-INT */
 int non_ascii(int ch)
 {
-	ch = (ch & 0xff);
-	return ((ch & 0x80) || (ch == 0x1b));
+	return !isascii(ch) || ch == '\033';
 }
 
 static int is_rfc2047_special(char ch)
@@ -136,7 +135,6 @@ void pp_user_info(const char *what, enum cmit_fmt fmt, struct strbuf *sb,
 	int namelen;
 	unsigned long time;
 	int tz;
-	const char *filler = "    ";
 
 	if (fmt == CMIT_FMT_ONELINE)
 		return;
@@ -155,7 +153,6 @@ void pp_user_info(const char *what, enum cmit_fmt fmt, struct strbuf *sb,
 		while (line < name_tail && isspace(name_tail[-1]))
 			name_tail--;
 		display_name_length = name_tail - line;
-		filler = "";
 		strbuf_addstr(sb, "From: ");
 		add_rfc2047(sb, line, display_name_length, encoding);
 		strbuf_add(sb, name_tail, namelen - display_name_length);
@@ -163,7 +160,7 @@ void pp_user_info(const char *what, enum cmit_fmt fmt, struct strbuf *sb,
 	} else {
 		strbuf_addf(sb, "%s: %.*s%.*s\n", what,
 			      (fmt == CMIT_FMT_FULLER) ? 4 : 0,
-			      filler, namelen, line);
+			      "    ", namelen, line);
 	}
 	switch (fmt) {
 	case CMIT_FMT_MEDIUM:
diff --git a/read-cache.c b/read-cache.c
index 940ec76fdf..3f587110cb 100644
--- a/read-cache.c
+++ b/read-cache.c
@@ -67,8 +67,10 @@ void rename_index_entry_at(struct index_state *istate, int nr, const char *new_n
  */
 void fill_stat_cache_info(struct cache_entry *ce, struct stat *st)
 {
-	ce->ce_ctime = st->st_ctime;
-	ce->ce_mtime = st->st_mtime;
+	ce->ce_ctime.sec = (unsigned int)st->st_ctime;
+	ce->ce_mtime.sec = (unsigned int)st->st_mtime;
+	ce->ce_ctime.nsec = ST_CTIME_NSEC(*st);
+	ce->ce_mtime.nsec = ST_MTIME_NSEC(*st);
 	ce->ce_dev = st->st_dev;
 	ce->ce_ino = st->st_ino;
 	ce->ce_uid = st->st_uid;
@@ -196,11 +198,18 @@ static int ce_match_stat_basic(struct cache_entry *ce, struct stat *st)
 	default:
 		die("internal error: ce_mode is %o", ce->ce_mode);
 	}
-	if (ce->ce_mtime != (unsigned int) st->st_mtime)
+	if (ce->ce_mtime.sec != (unsigned int)st->st_mtime)
 		changed |= MTIME_CHANGED;
-	if (trust_ctime && ce->ce_ctime != (unsigned int) st->st_ctime)
+	if (trust_ctime && ce->ce_ctime.sec != (unsigned int)st->st_ctime)
 		changed |= CTIME_CHANGED;
 
+#ifdef USE_NSEC
+	if (ce->ce_mtime.nsec != ST_MTIME_NSEC(*st))
+		changed |= MTIME_CHANGED;
+	if (trust_ctime && ce->ce_ctime.nsec != ST_CTIME_NSEC(*st))
+		changed |= CTIME_CHANGED;
+#endif
+
 	if (ce->ce_uid != (unsigned int) st->st_uid ||
 	    ce->ce_gid != (unsigned int) st->st_gid)
 		changed |= OWNER_CHANGED;
@@ -232,8 +241,16 @@ static int ce_match_stat_basic(struct cache_entry *ce, struct stat *st)
 static int is_racy_timestamp(const struct index_state *istate, struct cache_entry *ce)
 {
 	return (!S_ISGITLINK(ce->ce_mode) &&
-		istate->timestamp &&
-		((unsigned int)istate->timestamp) <= ce->ce_mtime);
+		istate->timestamp.sec &&
+#ifdef USE_NSEC
+		 /* nanosecond timestamped files can also be racy! */
+		(istate->timestamp.sec < ce->ce_mtime.sec ||
+		 (istate->timestamp.sec == ce->ce_mtime.sec &&
+		  istate->timestamp.nsec <= ce->ce_mtime.nsec))
+#else
+		istate->timestamp.sec <= ce->ce_mtime.sec
+#endif
+		 );
 }
 
 int ie_match_stat(const struct index_state *istate,
@@ -443,6 +460,26 @@ int remove_index_entry_at(struct index_state *istate, int pos)
 	return 1;
 }
 
+/*
+ * Remove all cache ententries marked for removal, that is where
+ * CE_REMOVE is set in ce_flags.  This is much more effective than
+ * calling remove_index_entry_at() for each entry to be removed.
+ */
+void remove_marked_cache_entries(struct index_state *istate)
+{
+	struct cache_entry **ce_array = istate->cache;
+	unsigned int i, j;
+
+	for (i = j = 0; i < istate->cache_nr; i++) {
+		if (ce_array[i]->ce_flags & CE_REMOVE)
+			remove_name_hash(ce_array[i]);
+		else
+			ce_array[j++] = ce_array[i];
+	}
+	istate->cache_changed = 1;
+	istate->cache_nr = j;
+}
+
 int remove_file_from_index(struct index_state *istate, const char *path)
 {
 	int pos = index_name_pos(istate, path, strlen(path));
@@ -1139,8 +1176,10 @@ static void convert_from_disk(struct ondisk_cache_entry *ondisk, struct cache_en
 	size_t len;
 	const char *name;
 
-	ce->ce_ctime = ntohl(ondisk->ctime.sec);
-	ce->ce_mtime = ntohl(ondisk->mtime.sec);
+	ce->ce_ctime.sec = ntohl(ondisk->ctime.sec);
+	ce->ce_mtime.sec = ntohl(ondisk->mtime.sec);
+	ce->ce_ctime.nsec = ntohl(ondisk->ctime.nsec);
+	ce->ce_mtime.nsec = ntohl(ondisk->mtime.nsec);
 	ce->ce_dev   = ntohl(ondisk->dev);
 	ce->ce_ino   = ntohl(ondisk->ino);
 	ce->ce_mode  = ntohl(ondisk->mode);
@@ -1206,7 +1245,8 @@ int read_index_from(struct index_state *istate, const char *path)
 		return istate->cache_nr;
 
 	errno = ENOENT;
-	istate->timestamp = 0;
+	istate->timestamp.sec = 0;
+	istate->timestamp.nsec = 0;
 	fd = open(path, O_RDONLY);
 	if (fd < 0) {
 		if (errno == ENOENT)
@@ -1258,7 +1298,9 @@ int read_index_from(struct index_state *istate, const char *path)
 		src_offset += ondisk_ce_size(ce);
 		dst_offset += ce_size(ce);
 	}
-	istate->timestamp = st.st_mtime;
+	istate->timestamp.sec = st.st_mtime;
+	istate->timestamp.nsec = ST_MTIME_NSEC(st);
+
 	while (src_offset <= mmap_size - 20 - 8) {
 		/* After an array of active_nr index entries,
 		 * there can be arbitrary number of extended
@@ -1288,14 +1330,15 @@ int read_index_from(struct index_state *istate, const char *path)
 
 int is_index_unborn(struct index_state *istate)
 {
-	return (!istate->cache_nr && !istate->alloc && !istate->timestamp);
+	return (!istate->cache_nr && !istate->alloc && !istate->timestamp.sec);
 }
 
 int discard_index(struct index_state *istate)
 {
 	istate->cache_nr = 0;
 	istate->cache_changed = 0;
-	istate->timestamp = 0;
+	istate->timestamp.sec = 0;
+	istate->timestamp.nsec = 0;
 	istate->name_hash_initialized = 0;
 	free_hash(&istate->name_hash);
 	cache_tree_free(&(istate->cache_tree));
@@ -1441,10 +1484,10 @@ static int ce_write_entry(git_SHA_CTX *c, int fd, struct cache_entry *ce)
 	struct ondisk_cache_entry *ondisk = xcalloc(1, size);
 	char *name;
 
-	ondisk->ctime.sec = htonl(ce->ce_ctime);
-	ondisk->ctime.nsec = 0;
-	ondisk->mtime.sec = htonl(ce->ce_mtime);
-	ondisk->mtime.nsec = 0;
+	ondisk->ctime.sec = htonl(ce->ce_ctime.sec);
+	ondisk->mtime.sec = htonl(ce->ce_mtime.sec);
+	ondisk->ctime.nsec = htonl(ce->ce_ctime.nsec);
+	ondisk->mtime.nsec = htonl(ce->ce_mtime.nsec);
 	ondisk->dev  = htonl(ce->ce_dev);
 	ondisk->ino  = htonl(ce->ce_ino);
 	ondisk->mode = htonl(ce->ce_mode);
@@ -1466,13 +1509,14 @@ static int ce_write_entry(git_SHA_CTX *c, int fd, struct cache_entry *ce)
 	return ce_write(c, fd, ondisk, size);
 }
 
-int write_index(const struct index_state *istate, int newfd)
+int write_index(struct index_state *istate, int newfd)
 {
 	git_SHA_CTX c;
 	struct cache_header hdr;
 	int i, err, removed, extended;
 	struct cache_entry **cache = istate->cache;
 	int entries = istate->cache_nr;
+	struct stat st;
 
 	for (i = removed = extended = 0; i < entries; i++) {
 		if (cache[i]->ce_flags & CE_REMOVE)
@@ -1516,7 +1560,12 @@ int write_index(const struct index_state *istate, int newfd)
 		if (err)
 			return -1;
 	}
-	return ce_flush(&c, newfd);
+
+	if (ce_flush(&c, newfd) || fstat(newfd, &st))
+		return -1;
+	istate->timestamp.sec = (unsigned int)st.st_mtime;
+	istate->timestamp.nsec = ST_MTIME_NSEC(st);
+	return 0;
 }
 
 /*
diff --git a/refs.c b/refs.c
index 6eb5f53846..b2a37e1185 100644
--- a/refs.c
+++ b/refs.c
@@ -1628,10 +1628,10 @@ int update_ref(const char *action, const char *refname,
 	return 0;
 }
 
-struct ref *find_ref_by_name(struct ref *list, const char *name)
+struct ref *find_ref_by_name(const struct ref *list, const char *name)
 {
 	for ( ; list; list = list->next)
 		if (!strcmp(list->name, name))
-			return list;
+			return (struct ref *)list;
 	return NULL;
 }
diff --git a/remote.c b/remote.c
index d7079c6dd8..7172835790 100644
--- a/remote.c
+++ b/remote.c
@@ -5,6 +5,7 @@
 #include "diff.h"
 #include "revision.h"
 #include "dir.h"
+#include "tag.h"
 
 static struct refspec s_tag_refspec = {
 	0,
@@ -495,7 +496,7 @@ static struct refspec *parse_refspec_internal(int nr_refspec, const char **refsp
 		int is_glob;
 		const char *lhs, *rhs;
 
-		llen = is_glob = 0;
+		is_glob = 0;
 
 		lhs = refspec[i];
 		if (*lhs == '+') {
@@ -778,10 +779,18 @@ struct ref *alloc_ref(const char *name)
 
 static struct ref *copy_ref(const struct ref *ref)
 {
-	struct ref *ret = xmalloc(sizeof(struct ref) + strlen(ref->name) + 1);
-	memcpy(ret, ref, sizeof(struct ref) + strlen(ref->name) + 1);
-	ret->next = NULL;
-	return ret;
+	struct ref *cpy;
+	size_t len;
+	if (!ref)
+		return NULL;
+	len = strlen(ref->name);
+	cpy = xmalloc(sizeof(struct ref) + len + 1);
+	memcpy(cpy, ref, sizeof(struct ref) + len + 1);
+	cpy->next = NULL;
+	cpy->symref = ref->symref ? xstrdup(ref->symref) : NULL;
+	cpy->remote_status = ref->remote_status ? xstrdup(ref->remote_status) : NULL;
+	cpy->peer_ref = copy_ref(ref->peer_ref);
+	return cpy;
 }
 
 struct ref *copy_ref_list(const struct ref *ref)
@@ -800,6 +809,7 @@ static void free_ref(struct ref *ref)
 {
 	if (!ref)
 		return;
+	free_ref(ref->peer_ref);
 	free(ref->remote_status);
 	free(ref->symref);
 	free(ref);
@@ -810,7 +820,6 @@ void free_refs(struct ref *ref)
 	struct ref *next;
 	while (ref) {
 		next = ref->next;
-		free(ref->peer_ref);
 		free_ref(ref);
 		ref = next;
 	}
@@ -927,6 +936,7 @@ static int match_explicit(struct ref *src, struct ref *dst,
 			  struct refspec *rs)
 {
 	struct ref *matched_src, *matched_dst;
+	int copy_src;
 
 	const char *dst_value = rs->dst;
 	char *dst_guess;
@@ -937,6 +947,7 @@ static int match_explicit(struct ref *src, struct ref *dst,
 	matched_src = matched_dst = NULL;
 	switch (count_refspec_match(rs->src, src, &matched_src)) {
 	case 1:
+		copy_src = 1;
 		break;
 	case 0:
 		/* The source could be in the get_sha1() format
@@ -946,6 +957,7 @@ static int match_explicit(struct ref *src, struct ref *dst,
 		matched_src = try_explicit_object_name(rs->src);
 		if (!matched_src)
 			return error("src refspec %s does not match any.", rs->src);
+		copy_src = 0;
 		break;
 	default:
 		return error("src refspec %s matches more than one.", rs->src);
@@ -991,7 +1003,7 @@ static int match_explicit(struct ref *src, struct ref *dst,
 		return error("dst ref %s receives from more than one src.",
 		      matched_dst->name);
 	else {
-		matched_dst->peer_ref = matched_src;
+		matched_dst->peer_ref = copy_src ? copy_ref(matched_src) : matched_src;
 		matched_dst->force = rs->force;
 	}
 	return 0;
@@ -1040,6 +1052,7 @@ int match_refs(struct ref *src, struct ref *dst, struct ref ***dst_tail,
 	struct refspec *rs;
 	int send_all = flags & MATCH_REFS_ALL;
 	int send_mirror = flags & MATCH_REFS_MIRROR;
+	int errs;
 	static const char *default_refspec[] = { ":", 0 };
 
 	if (!nr_refspec) {
@@ -1047,8 +1060,7 @@ int match_refs(struct ref *src, struct ref *dst, struct ref ***dst_tail,
 		refspec = default_refspec;
 	}
 	rs = parse_push_refspec(nr_refspec, (const char **) refspec);
-	if (match_explicit_refs(src, dst, dst_tail, rs, nr_refspec))
-		return -1;
+	errs = match_explicit_refs(src, dst, dst_tail, rs, nr_refspec);
 
 	/* pick the remainder */
 	for ( ; src; src = src->next) {
@@ -1099,11 +1111,13 @@ int match_refs(struct ref *src, struct ref *dst, struct ref ***dst_tail,
 			dst_peer = make_linked_ref(dst_name, dst_tail);
 			hashcpy(dst_peer->new_sha1, src->new_sha1);
 		}
-		dst_peer->peer_ref = src;
+		dst_peer->peer_ref = copy_ref(src);
 		dst_peer->force = pat->force;
 	free_name:
 		free(dst_name);
 	}
+	if (errs)
+		return -1;
 	return 0;
 }
 
@@ -1269,6 +1283,54 @@ int resolve_remote_symref(struct ref *ref, struct ref *list)
 	return 1;
 }
 
+static void unmark_and_free(struct commit_list *list, unsigned int mark)
+{
+	while (list) {
+		struct commit_list *temp = list;
+		temp->item->object.flags &= ~mark;
+		list = temp->next;
+		free(temp);
+	}
+}
+
+int ref_newer(const unsigned char *new_sha1, const unsigned char *old_sha1)
+{
+	struct object *o;
+	struct commit *old, *new;
+	struct commit_list *list, *used;
+	int found = 0;
+
+	/* Both new and old must be commit-ish and new is descendant of
+	 * old.  Otherwise we require --force.
+	 */
+	o = deref_tag(parse_object(old_sha1), NULL, 0);
+	if (!o || o->type != OBJ_COMMIT)
+		return 0;
+	old = (struct commit *) o;
+
+	o = deref_tag(parse_object(new_sha1), NULL, 0);
+	if (!o || o->type != OBJ_COMMIT)
+		return 0;
+	new = (struct commit *) o;
+
+	if (parse_commit(new) < 0)
+		return 0;
+
+	used = list = NULL;
+	commit_list_insert(new, &list);
+	while (list) {
+		new = pop_most_recent_commit(&list, TMP_MARK);
+		commit_list_insert(new, &used);
+		if (new == old) {
+			found = 1;
+			break;
+		}
+	}
+	unmark_and_free(list, TMP_MARK);
+	unmark_and_free(used, TMP_MARK);
+	return found;
+}
+
 /*
  * Return true if there is anything to report, otherwise false.
  */
@@ -1376,3 +1438,68 @@ int format_tracking_info(struct branch *branch, struct strbuf *sb)
 			    base, num_ours, num_theirs);
 	return 1;
 }
+
+static int one_local_ref(const char *refname, const unsigned char *sha1, int flag, void *cb_data)
+{
+	struct ref ***local_tail = cb_data;
+	struct ref *ref;
+	int len;
+
+	/* we already know it starts with refs/ to get here */
+	if (check_ref_format(refname + 5))
+		return 0;
+
+	len = strlen(refname) + 1;
+	ref = xcalloc(1, sizeof(*ref) + len);
+	hashcpy(ref->new_sha1, sha1);
+	memcpy(ref->name, refname, len);
+	**local_tail = ref;
+	*local_tail = &ref->next;
+	return 0;
+}
+
+struct ref *get_local_heads(void)
+{
+	struct ref *local_refs, **local_tail = &local_refs;
+	for_each_ref(one_local_ref, &local_tail);
+	return local_refs;
+}
+
+struct ref *guess_remote_head(const struct ref *head,
+			      const struct ref *refs,
+			      int all)
+{
+	const struct ref *r;
+	struct ref *list = NULL;
+	struct ref **tail = &list;
+
+	if (!head)
+		return NULL;
+
+	/*
+	 * Some transports support directly peeking at
+	 * where HEAD points; if that is the case, then
+	 * we don't have to guess.
+	 */
+	if (head->symref)
+		return copy_ref(find_ref_by_name(refs, head->symref));
+
+	/* If refs/heads/master could be right, it is. */
+	if (!all) {
+		r = find_ref_by_name(refs, "refs/heads/master");
+		if (r && !hashcmp(r->old_sha1, head->old_sha1))
+			return copy_ref(r);
+	}
+
+	/* Look for another ref that points there */
+	for (r = refs; r; r = r->next) {
+		if (r != head && !hashcmp(r->old_sha1, head->old_sha1)) {
+			*tail = copy_ref(r);
+			tail = &((*tail)->next);
+			if (!all)
+				break;
+		}
+	}
+
+	return list;
+}
diff --git a/remote.h b/remote.h
index a46a5be131..de3d21b662 100644
--- a/remote.h
+++ b/remote.h
@@ -74,6 +74,7 @@ int check_ref_type(const struct ref *ref, int flags);
 void free_refs(struct ref *ref);
 
 int resolve_remote_symref(struct ref *ref, struct ref *list);
+int ref_newer(const unsigned char *new_sha1, const unsigned char *old_sha1);
 
 /*
  * Removes and frees any duplicate refs in the map.
@@ -137,4 +138,15 @@ enum match_refs_flags {
 int stat_tracking_info(struct branch *branch, int *num_ours, int *num_theirs);
 int format_tracking_info(struct branch *branch, struct strbuf *sb);
 
+struct ref *get_local_heads(void);
+/*
+ * Find refs from a list which are likely to be pointed to by the given HEAD
+ * ref. If 'all' is false, returns the most likely ref; otherwise, returns a
+ * list of all candidate refs. If no match is found (or 'head' is NULL),
+ * returns NULL. All returns are newly allocated and should be freed.
+ */
+struct ref *guess_remote_head(const struct ref *head,
+			      const struct ref *refs,
+			      int all);
+
 #endif
diff --git a/revision.c b/revision.c
index c4efe5b22e..f5771c7898 100644
--- a/revision.c
+++ b/revision.c
@@ -994,16 +994,6 @@ static void add_message_grep(struct rev_info *revs, const char *pattern)
 	add_grep(revs, pattern, GREP_PATTERN_BODY);
 }
 
-static void add_ignore_packed(struct rev_info *revs, const char *name)
-{
-	int num = ++revs->num_ignore_packed;
-
-	revs->ignore_packed = xrealloc(revs->ignore_packed,
-				       sizeof(const char *) * (num + 1));
-	revs->ignore_packed[num-1] = name;
-	revs->ignore_packed[num] = NULL;
-}
-
 static int handle_revision_opt(struct rev_info *revs, int argc, const char **argv,
 			       int *unkc, const char **unkv)
 {
@@ -1116,12 +1106,12 @@ static int handle_revision_opt(struct rev_info *revs, int argc, const char **arg
 		revs->edge_hint = 1;
 	} else if (!strcmp(arg, "--unpacked")) {
 		revs->unpacked = 1;
-		free(revs->ignore_packed);
-		revs->ignore_packed = NULL;
-		revs->num_ignore_packed = 0;
-	} else if (!prefixcmp(arg, "--unpacked=")) {
+		revs->kept_pack_only = 0;
+	} else if (!strcmp(arg, "--kept-pack-only")) {
 		revs->unpacked = 1;
-		add_ignore_packed(revs, arg+11);
+		revs->kept_pack_only = 1;
+	} else if (!prefixcmp(arg, "--unpacked=")) {
+		die("--unpacked=<packfile> no longer supported.");
 	} else if (!strcmp(arg, "-r")) {
 		revs->diff = 1;
 		DIFF_OPT_SET(&revs->diffopt, RECURSIVE);
@@ -1689,7 +1679,10 @@ enum commit_action simplify_commit(struct rev_info *revs, struct commit *commit)
 {
 	if (commit->object.flags & SHOWN)
 		return commit_ignore;
-	if (revs->unpacked && has_sha1_pack(commit->object.sha1, revs->ignore_packed))
+	if (revs->unpacked &&
+	    (revs->kept_pack_only
+	     ? has_sha1_kept_pack(commit->object.sha1)
+	     : has_sha1_pack(commit->object.sha1)))
 		return commit_ignore;
 	if (revs->show_all)
 		return commit_show;
diff --git a/revision.h b/revision.h
index 7cf848771b..ad123d78c5 100644
--- a/revision.h
+++ b/revision.h
@@ -49,7 +49,8 @@ struct rev_info {
 			blob_objects:1,
 			edge_hint:1,
 			limited:1,
-			unpacked:1, /* see also ignore_packed below */
+			unpacked:1,
+			kept_pack_only:1,
 			boundary:2,
 			left_right:1,
 			rewrite_parents:1,
@@ -80,16 +81,13 @@ struct rev_info {
 			missing_newline:1;
 	enum date_mode date_mode;
 
-	const char **ignore_packed; /* pretend objects in these are unpacked */
-	int num_ignore_packed;
-
 	unsigned int	abbrev;
 	enum cmit_fmt	commit_format;
 	struct log_info *loginfo;
 	int		nr, total;
 	const char	*mime_boundary;
 	char		*message_id;
-	const char	*ref_message_id;
+	struct string_list *ref_message_ids;
 	const char	*add_signoff;
 	const char	*extra_headers;
 	const char	*log_reencode;
diff --git a/sha1_file.c b/sha1_file.c
index 032300c4c6..456317356f 100644
--- a/sha1_file.c
+++ b/sha1_file.c
@@ -1919,25 +1919,8 @@ off_t find_pack_entry_one(const unsigned char *sha1,
 	return 0;
 }
 
-int matches_pack_name(struct packed_git *p, const char *name)
-{
-	const char *last_c, *c;
-
-	if (!strcmp(p->pack_name, name))
-		return 1;
-
-	for (c = p->pack_name, last_c = c; *c;)
-		if (*c == '/')
-			last_c = ++c;
-		else
-			++c;
-	if (!strcmp(last_c, name))
-		return 1;
-
-	return 0;
-}
-
-static int find_pack_entry(const unsigned char *sha1, struct pack_entry *e, const char **ignore_packed)
+static int find_pack_ent(const unsigned char *sha1, struct pack_entry *e,
+			 int kept_pack_only)
 {
 	static struct packed_git *last_found = (void *)1;
 	struct packed_git *p;
@@ -1949,15 +1932,8 @@ static int find_pack_entry(const unsigned char *sha1, struct pack_entry *e, cons
 	p = (last_found == (void *)1) ? packed_git : last_found;
 
 	do {
-		if (ignore_packed) {
-			const char **ig;
-			for (ig = ignore_packed; *ig; ig++)
-				if (matches_pack_name(p, *ig))
-					break;
-			if (*ig)
-				goto next;
-		}
-
+		if (kept_pack_only && !p->pack_keep)
+			goto next;
 		if (p->num_bad_objects) {
 			unsigned i;
 			for (i = 0; i < p->num_bad_objects; i++)
@@ -1997,6 +1973,16 @@ static int find_pack_entry(const unsigned char *sha1, struct pack_entry *e, cons
 	return 0;
 }
 
+static int find_pack_entry(const unsigned char *sha1, struct pack_entry *e)
+{
+	return find_pack_ent(sha1, e, 0);
+}
+
+static int find_kept_pack_entry(const unsigned char *sha1, struct pack_entry *e)
+{
+	return find_pack_ent(sha1, e, 1);
+}
+
 struct packed_git *find_sha1_pack(const unsigned char *sha1,
 				  struct packed_git *packs)
 {
@@ -2038,7 +2024,7 @@ int sha1_object_info(const unsigned char *sha1, unsigned long *sizep)
 	struct pack_entry e;
 	int status;
 
-	if (!find_pack_entry(sha1, &e, NULL)) {
+	if (!find_pack_entry(sha1, &e)) {
 		/* Most likely it's a loose object. */
 		status = sha1_loose_object_info(sha1, sizep);
 		if (status >= 0)
@@ -2046,7 +2032,7 @@ int sha1_object_info(const unsigned char *sha1, unsigned long *sizep)
 
 		/* Not a loose object; someone else may have just packed it. */
 		reprepare_packed_git();
-		if (!find_pack_entry(sha1, &e, NULL))
+		if (!find_pack_entry(sha1, &e))
 			return status;
 	}
 
@@ -2065,7 +2051,7 @@ static void *read_packed_sha1(const unsigned char *sha1,
 	struct pack_entry e;
 	void *data;
 
-	if (!find_pack_entry(sha1, &e, NULL))
+	if (!find_pack_entry(sha1, &e))
 		return NULL;
 	data = cache_or_unpack_entry(e.p, e.offset, size, type, 1);
 	if (!data) {
@@ -2464,17 +2450,23 @@ int has_pack_file(const unsigned char *sha1)
 	return 1;
 }
 
-int has_sha1_pack(const unsigned char *sha1, const char **ignore_packed)
+int has_sha1_pack(const unsigned char *sha1)
+{
+	struct pack_entry e;
+	return find_pack_entry(sha1, &e);
+}
+
+int has_sha1_kept_pack(const unsigned char *sha1)
 {
 	struct pack_entry e;
-	return find_pack_entry(sha1, &e, ignore_packed);
+	return find_kept_pack_entry(sha1, &e);
 }
 
 int has_sha1_file(const unsigned char *sha1)
 {
 	struct pack_entry e;
 
-	if (find_pack_entry(sha1, &e, NULL))
+	if (find_pack_entry(sha1, &e))
 		return 1;
 	return has_loose_object(sha1);
 }
diff --git a/string-list.c b/string-list.c
index 15e14cf47a..1ac536e638 100644
--- a/string-list.c
+++ b/string-list.c
@@ -92,6 +92,16 @@ struct string_list_item *string_list_lookup(const char *string, struct string_li
 	return list->items + i;
 }
 
+int for_each_string_list(string_list_each_func_t fn,
+			 struct string_list *list, void *cb_data)
+{
+	int i, ret = 0;
+	for (i = 0; i < list->nr; i++)
+		if ((ret = fn(&list->items[i], cb_data)))
+			break;
+	return ret;
+}
+
 void string_list_clear(struct string_list *list, int free_util)
 {
 	if (list->items) {
diff --git a/string-list.h b/string-list.h
index d32ba05202..14bbc477de 100644
--- a/string-list.h
+++ b/string-list.h
@@ -20,6 +20,11 @@ void string_list_clear(struct string_list *list, int free_util);
 typedef void (*string_list_clear_func_t)(void *p, const char *str);
 void string_list_clear_func(struct string_list *list, string_list_clear_func_t clearfunc);
 
+/* Use this function to iterate over each item */
+typedef int (*string_list_each_func_t)(struct string_list_item *, void *);
+int for_each_string_list(string_list_each_func_t,
+			 struct string_list *list, void *cb_data);
+
 /* Use these functions only on sorted lists: */
 int string_list_has_string(const struct string_list *list, const char *string);
 int string_list_find_insert_index(const struct string_list *list, const char *string,
diff --git a/symlinks.c b/symlinks.c
index f262b7c44b..1d6b35b858 100644
--- a/symlinks.c
+++ b/symlinks.c
@@ -1,51 +1,54 @@
 #include "cache.h"
 
-static struct cache_def {
-	char path[PATH_MAX + 1];
-	int len;
-	int flags;
-	int track_flags;
-	int prefix_len_stat_func;
-} cache;
-
 /*
  * Returns the length (on a path component basis) of the longest
- * common prefix match of 'name' and the cached path string.
+ * common prefix match of 'name_a' and 'name_b'.
  */
-static inline int longest_match_lstat_cache(int len, const char *name,
-					    int *previous_slash)
+static int longest_path_match(const char *name_a, int len_a,
+			      const char *name_b, int len_b,
+			      int *previous_slash)
 {
 	int max_len, match_len = 0, match_len_prev = 0, i = 0;
 
-	max_len = len < cache.len ? len : cache.len;
-	while (i < max_len && name[i] == cache.path[i]) {
-		if (name[i] == '/') {
+	max_len = len_a < len_b ? len_a : len_b;
+	while (i < max_len && name_a[i] == name_b[i]) {
+		if (name_a[i] == '/') {
 			match_len_prev = match_len;
 			match_len = i;
 		}
 		i++;
 	}
-	/* Is the cached path string a substring of 'name'? */
-	if (i == cache.len && cache.len < len && name[cache.len] == '/') {
-		match_len_prev = match_len;
-		match_len = cache.len;
-	/* Is 'name' a substring of the cached path string? */
-	} else if ((i == len && len < cache.len && cache.path[len] == '/') ||
-		   (i == len && len == cache.len)) {
+	/*
+	 * Is 'name_b' a substring of 'name_a', the other way around,
+	 * or is 'name_a' and 'name_b' the exact same string?
+	 */
+	if (i >= max_len && ((len_a > len_b && name_a[len_b] == '/') ||
+			     (len_a < len_b && name_b[len_a] == '/') ||
+			     (len_a == len_b))) {
 		match_len_prev = match_len;
-		match_len = len;
+		match_len = i;
 	}
 	*previous_slash = match_len_prev;
 	return match_len;
 }
 
-static inline void reset_lstat_cache(int track_flags, int prefix_len_stat_func)
+static struct cache_def {
+	char path[PATH_MAX + 1];
+	int len;
+	int flags;
+	int track_flags;
+	int prefix_len_stat_func;
+} cache;
+
+static inline void reset_lstat_cache(void)
 {
 	cache.path[0] = '\0';
 	cache.len = 0;
 	cache.flags = 0;
-	cache.track_flags = track_flags;
-	cache.prefix_len_stat_func = prefix_len_stat_func;
+	/*
+	 * The track_flags and prefix_len_stat_func members is only
+	 * set by the safeguard rule inside lstat_cache()
+	 */
 }
 
 #define FL_DIR      (1 << 0)
@@ -67,7 +70,7 @@ static inline void reset_lstat_cache(int track_flags, int prefix_len_stat_func)
  * of the prefix, where the cache should use the stat() function
  * instead of the lstat() function to test each path component.
  */
-static int lstat_cache(int len, const char *name,
+static int lstat_cache(const char *name, int len,
 		       int track_flags, int prefix_len_stat_func)
 {
 	int match_len, last_slash, last_slash_dir, previous_slash;
@@ -77,11 +80,13 @@ static int lstat_cache(int len, const char *name,
 	if (cache.track_flags != track_flags ||
 	    cache.prefix_len_stat_func != prefix_len_stat_func) {
 		/*
-		 * As a safeguard we clear the cache if the values of
-		 * track_flags and/or prefix_len_stat_func does not
-		 * match with the last supplied values.
+		 * As a safeguard rule we clear the cache if the
+		 * values of track_flags and/or prefix_len_stat_func
+		 * does not match with the last supplied values.
 		 */
-		reset_lstat_cache(track_flags, prefix_len_stat_func);
+		reset_lstat_cache();
+		cache.track_flags = track_flags;
+		cache.prefix_len_stat_func = prefix_len_stat_func;
 		match_len = last_slash = 0;
 	} else {
 		/*
@@ -89,7 +94,8 @@ static int lstat_cache(int len, const char *name,
 		 * the 2 "excluding" path types.
 		 */
 		match_len = last_slash =
-			longest_match_lstat_cache(len, name, &previous_slash);
+			longest_path_match(name, len, cache.path, cache.len,
+					   &previous_slash);
 		match_flags = cache.flags & track_flags & (FL_NOENT|FL_SYMLINK);
 		if (match_flags && match_len == cache.len)
 			return match_flags;
@@ -153,7 +159,7 @@ static int lstat_cache(int len, const char *name,
 		cache.path[last_slash] = '\0';
 		cache.len = last_slash;
 		cache.flags = save_flags;
-	} else if (track_flags & FL_DIR &&
+	} else if ((track_flags & FL_DIR) &&
 		   last_slash_dir > 0 && last_slash_dir <= PATH_MAX) {
 		/*
 		 * We have a separate test for the directory case,
@@ -170,7 +176,7 @@ static int lstat_cache(int len, const char *name,
 		cache.len = last_slash_dir;
 		cache.flags = FL_DIR;
 	} else {
-		reset_lstat_cache(track_flags, prefix_len_stat_func);
+		reset_lstat_cache();
 	}
 	return ret_flags;
 }
@@ -179,19 +185,19 @@ static int lstat_cache(int len, const char *name,
  * Invalidate the given 'name' from the cache, if 'name' matches
  * completely with the cache.
  */
-void invalidate_lstat_cache(int len, const char *name)
+void invalidate_lstat_cache(const char *name, int len)
 {
 	int match_len, previous_slash;
 
-	match_len = longest_match_lstat_cache(len, name, &previous_slash);
+	match_len = longest_path_match(name, len, cache.path, cache.len,
+				       &previous_slash);
 	if (len == match_len) {
 		if ((cache.track_flags & FL_DIR) && previous_slash > 0) {
 			cache.path[previous_slash] = '\0';
 			cache.len = previous_slash;
 			cache.flags = FL_DIR;
 		} else
-			reset_lstat_cache(cache.track_flags,
-					  cache.prefix_len_stat_func);
+			reset_lstat_cache();
 	}
 }
 
@@ -200,7 +206,7 @@ void invalidate_lstat_cache(int len, const char *name)
  */
 void clear_lstat_cache(void)
 {
-	reset_lstat_cache(0, 0);
+	reset_lstat_cache();
 }
 
 #define USE_ONLY_LSTAT  0
@@ -208,9 +214,9 @@ void clear_lstat_cache(void)
 /*
  * Return non-zero if path 'name' has a leading symlink component
  */
-int has_symlink_leading_path(int len, const char *name)
+int has_symlink_leading_path(const char *name, int len)
 {
-	return lstat_cache(len, name,
+	return lstat_cache(name, len,
 			   FL_SYMLINK|FL_DIR, USE_ONLY_LSTAT) &
 		FL_SYMLINK;
 }
@@ -219,9 +225,9 @@ int has_symlink_leading_path(int len, const char *name)
  * Return non-zero if path 'name' has a leading symlink component or
  * if some leading path component does not exists.
  */
-int has_symlink_or_noent_leading_path(int len, const char *name)
+int has_symlink_or_noent_leading_path(const char *name, int len)
 {
-	return lstat_cache(len, name,
+	return lstat_cache(name, len,
 			   FL_SYMLINK|FL_NOENT|FL_DIR, USE_ONLY_LSTAT) &
 		(FL_SYMLINK|FL_NOENT);
 }
@@ -233,9 +239,68 @@ int has_symlink_or_noent_leading_path(int len, const char *name)
  * 'prefix_len', thus we then allow for symlinks in the prefix part as
  * long as those points to real existing directories.
  */
-int has_dirs_only_path(int len, const char *name, int prefix_len)
+int has_dirs_only_path(const char *name, int len, int prefix_len)
 {
-	return lstat_cache(len, name,
+	return lstat_cache(name, len,
 			   FL_DIR|FL_FULLPATH, prefix_len) &
 		FL_DIR;
 }
+
+static struct removal_def {
+	char path[PATH_MAX];
+	int len;
+} removal;
+
+static void do_remove_scheduled_dirs(int new_len)
+{
+	while (removal.len > new_len) {
+		removal.path[removal.len] = '\0';
+		if (rmdir(removal.path))
+			break;
+		do {
+			removal.len--;
+		} while (removal.len > new_len &&
+			 removal.path[removal.len] != '/');
+	}
+	removal.len = new_len;
+	return;
+}
+
+void schedule_dir_for_removal(const char *name, int len)
+{
+	int match_len, last_slash, i, previous_slash;
+
+	match_len = last_slash = i =
+		longest_path_match(name, len, removal.path, removal.len,
+				   &previous_slash);
+	/* Find last slash inside 'name' */
+	while (i < len) {
+		if (name[i] == '/')
+			last_slash = i;
+		i++;
+	}
+
+	/*
+	 * If we are about to go down the directory tree, we check if
+	 * we must first go upwards the tree, such that we then can
+	 * remove possible empty directories as we go upwards.
+	 */
+	if (match_len < last_slash && match_len < removal.len)
+		do_remove_scheduled_dirs(match_len);
+	/*
+	 * If we go deeper down the directory tree, we only need to
+	 * save the new path components as we go down.
+	 */
+	if (match_len < last_slash) {
+		memcpy(&removal.path[match_len], &name[match_len],
+		       last_slash - match_len);
+		removal.len = last_slash;
+	}
+	return;
+}
+
+void remove_scheduled_dirs(void)
+{
+	do_remove_scheduled_dirs(0);
+	return;
+}
diff --git a/t/lib-httpd.sh b/t/lib-httpd.sh
index 86cdebc727..589aaf8214 100644
--- a/t/lib-httpd.sh
+++ b/t/lib-httpd.sh
@@ -94,13 +94,18 @@ prepare_httpd() {
 }
 
 start_httpd() {
-	prepare_httpd
+	prepare_httpd >&3 2>&4
 
 	trap 'stop_httpd; die' EXIT
 
 	"$LIB_HTTPD_PATH" -d "$HTTPD_ROOT_PATH" \
 		-f "$TEST_PATH/apache.conf" $HTTPD_PARA \
-		-c "Listen 127.0.0.1:$LIB_HTTPD_PORT" -k start
+		-c "Listen 127.0.0.1:$LIB_HTTPD_PORT" -k start \
+		>&3 2>&4
+	if ! test $? = 0; then
+		say "skipping test, web server setup failed"
+		test_done
+	fi
 }
 
 stop_httpd() {
diff --git a/t/lib-httpd/apache.conf b/t/lib-httpd/apache.conf
index af6e5e1d6a..f460e40416 100644
--- a/t/lib-httpd/apache.conf
+++ b/t/lib-httpd/apache.conf
@@ -4,6 +4,9 @@ DocumentRoot www
 LogFormat "%h %l %u %t \"%r\" %>s %b" common
 CustomLog access.log common
 ErrorLog error.log
+<IfModule !mod_log_config.c>
+	LoadModule log_config_module modules/mod_log_config.so
+</IfModule>
 
 <IfDefine Darwin>
 	LoadModule log_config_module modules/mod_log_config.so
diff --git a/t/t0000-basic.sh b/t/t0000-basic.sh
index 70df15cbd8..ddcd5b0efb 100755
--- a/t/t0000-basic.sh
+++ b/t/t0000-basic.sh
@@ -127,7 +127,7 @@ cat >expected <<\EOF
 EOF
 test_expect_success \
     'validate git ls-files output for a known tree.' \
-    'diff current expected'
+    'test_cmp expected current'
 
 test_expect_success \
     'writing tree out with git write-tree.' \
@@ -147,7 +147,7 @@ cat >expected <<\EOF
 EOF
 test_expect_success \
     'git ls-tree output for a known tree.' \
-    'diff current expected'
+    'test_cmp expected current'
 
 # This changed in ls-tree pathspec change -- recursive does
 # not show tree nodes anymore.
@@ -166,7 +166,7 @@ cat >expected <<\EOF
 EOF
 test_expect_success \
     'git ls-tree -r output for a known tree.' \
-    'diff current expected'
+    'test_cmp expected current'
 
 # But with -r -t we can have both.
 test_expect_success \
@@ -187,7 +187,7 @@ cat >expected <<\EOF
 EOF
 test_expect_success \
     'git ls-tree -r output for a known tree.' \
-    'diff current expected'
+    'test_cmp expected current'
 
 test_expect_success \
     'writing partial tree out with git write-tree --prefix.' \
diff --git a/t/t1100-commit-tree-options.sh b/t/t1100-commit-tree-options.sh
index 7f7fc36734..c4414ff576 100755
--- a/t/t1100-commit-tree-options.sh
+++ b/t/t1100-commit-tree-options.sh
@@ -40,6 +40,6 @@ test_expect_success \
 
 test_expect_success \
     'compare commit' \
-    'diff expected commit'
+    'test_cmp expected commit'
 
 test_done
diff --git a/t/t1300-repo-config.sh b/t/t1300-repo-config.sh
index 11b82f43dd..3c06842d99 100755
--- a/t/t1300-repo-config.sh
+++ b/t/t1300-repo-config.sh
@@ -336,10 +336,10 @@ test_expect_success 'get bool variable with empty value' \
 	'git config --bool emptyvalue.variable > output &&
 	 cmp output expect'
 
-git config > output 2>&1
-
-test_expect_success 'no arguments, but no crash' \
-	"test $? = 129 && grep usage output"
+test_expect_success 'no arguments, but no crash' '
+	test_must_fail git config >output 2>&1 &&
+	grep usage output
+'
 
 cat > .git/config << EOF
 [a.b]
@@ -373,7 +373,7 @@ EOF
 test_expect_success 'new variable inserts into proper section' 'cmp .git/config expect'
 
 test_expect_success 'alternative GIT_CONFIG (non-existing file should fail)' \
-	'git config --file non-existing-config -l; test $? != 0'
+	'test_must_fail git config --file non-existing-config -l'
 
 cat > other-config << EOF
 [ein]
diff --git a/t/t1400-update-ref.sh b/t/t1400-update-ref.sh
index bd589268fc..54ba3df95f 100755
--- a/t/t1400-update-ref.sh
+++ b/t/t1400-update-ref.sh
@@ -137,7 +137,7 @@ $B $A $GIT_COMMITTER_NAME <$GIT_COMMITTER_EMAIL> 1117150860 +0000
 EOF
 test_expect_success \
 	"verifying $m's log" \
-	"diff expect .git/logs/$m"
+	"test_cmp expect .git/logs/$m"
 rm -rf .git/$m .git/logs expect
 
 test_expect_success \
@@ -168,7 +168,7 @@ $B $A $GIT_COMMITTER_NAME <$GIT_COMMITTER_EMAIL> 1117150980 +0000
 EOF
 test_expect_success \
 	"verifying $m's log" \
-	'diff expect .git/logs/$m'
+	'test_cmp expect .git/logs/$m'
 rm -f .git/$m .git/logs/$m expect
 
 git update-ref $m $D
@@ -272,7 +272,7 @@ $h_FIXED $h_MERGED $GIT_COMMITTER_NAME <$GIT_COMMITTER_EMAIL> 1117151100 +0000	c
 EOF
 test_expect_success \
 	'git commit logged updates' \
-	"diff expect .git/logs/$m"
+	"test_cmp expect .git/logs/$m"
 unset h_TEST h_OTHER h_FIXED h_MERGED
 
 test_expect_success \
diff --git a/t/t1450-fsck.sh b/t/t1450-fsck.sh
index 4597af0eb6..a22632f483 100755
--- a/t/t1450-fsck.sh
+++ b/t/t1450-fsck.sh
@@ -28,4 +28,71 @@ test_expect_success 'loose objects borrowed from alternate are not missing' '
 	)
 '
 
+# Corruption tests follow.  Make sure to remove all traces of the
+# specific corruption you test afterwards, lest a later test trip over
+# it.
+
+test_expect_success 'object with bad sha1' '
+	sha=$(echo blob | git hash-object -w --stdin) &&
+	echo $sha &&
+	old=$(echo $sha | sed "s+^..+&/+") &&
+	new=$(dirname $old)/ffffffffffffffffffffffffffffffffffffff &&
+	sha="$(dirname $new)$(basename $new)"
+	mv .git/objects/$old .git/objects/$new &&
+	git update-index --add --cacheinfo 100644 $sha foo &&
+	tree=$(git write-tree) &&
+	cmt=$(echo bogus | git commit-tree $tree) &&
+	git update-ref refs/heads/bogus $cmt &&
+	(git fsck 2>out; true) &&
+	grep "$sha.*corrupt" out &&
+	rm -f .git/objects/$new &&
+	git update-ref -d refs/heads/bogus &&
+	git read-tree -u --reset HEAD
+'
+
+test_expect_success 'branch pointing to non-commit' '
+	git rev-parse HEAD^{tree} > .git/refs/heads/invalid &&
+	git fsck 2>out &&
+	grep "not a commit" out &&
+	git update-ref -d refs/heads/invalid
+'
+
+cat > invalid-tag <<EOF
+object ffffffffffffffffffffffffffffffffffffffff
+type commit
+tag invalid
+tagger T A Gger <tagger@example.com> 1234567890 -0000
+
+This is an invalid tag.
+EOF
+
+test_expect_failure 'tag pointing to nonexistent' '
+	tag=$(git hash-object -w --stdin < invalid-tag) &&
+	echo $tag > .git/refs/tags/invalid &&
+	git fsck --tags 2>out &&
+	cat out &&
+	grep "could not load tagged object" out &&
+	rm .git/refs/tags/invalid
+'
+
+cat > wrong-tag <<EOF
+object $(echo blob | git hash-object -w --stdin)
+type commit
+tag wrong
+tagger T A Gger <tagger@example.com> 1234567890 -0000
+
+This is an invalid tag.
+EOF
+
+test_expect_failure 'tag pointing to something else than its type' '
+	tag=$(git hash-object -w --stdin < wrong-tag) &&
+	echo $tag > .git/refs/tags/wrong &&
+	git fsck --tags 2>out &&
+	cat out &&
+	grep "some sane error message" out &&
+	rm .git/refs/tags/wrong
+'
+
+
+
 test_done
diff --git a/t/t3000-ls-files-others.sh b/t/t3000-ls-files-others.sh
index bc0a351392..36eee0f8ae 100755
--- a/t/t3000-ls-files-others.sh
+++ b/t/t3000-ls-files-others.sh
@@ -42,7 +42,7 @@ test_expect_success \
 
 test_expect_success \
     'git ls-files --others should pick up symlinks.' \
-    'diff output expected1'
+    'test_cmp expected1 output'
 
 test_expect_success \
     'git ls-files --others --directory to show output.' \
@@ -51,6 +51,6 @@ test_expect_success \
 
 test_expect_success \
     'git ls-files --others --directory should not get confused.' \
-    'diff output expected2'
+    'test_cmp expected2 output'
 
 test_done
diff --git a/t/t3010-ls-files-killed-modified.sh b/t/t3010-ls-files-killed-modified.sh
index ec14040637..e4f02a0968 100755
--- a/t/t3010-ls-files-killed-modified.sh
+++ b/t/t3010-ls-files-killed-modified.sh
@@ -75,7 +75,7 @@ EOF
 
 test_expect_success \
     'validate git ls-files -k output.' \
-    'diff .output .expected'
+    'test_cmp .expected .output'
 
 test_expect_success \
     'git ls-files -m to show modified files.' \
@@ -91,6 +91,6 @@ EOF
 
 test_expect_success \
     'validate git ls-files -m output.' \
-    'diff .output .expected'
+    'test_cmp .expected .output'
 
 test_done
diff --git a/t/t3406-rebase-message.sh b/t/t3406-rebase-message.sh
index 5391080943..85fc7c4af8 100755
--- a/t/t3406-rebase-message.sh
+++ b/t/t3406-rebase-message.sh
@@ -22,7 +22,8 @@ test_expect_success setup '
 	git checkout topic &&
 	quick_one A &&
 	quick_one B &&
-	quick_one Z
+	quick_one Z &&
+	git tag start
 
 '
 
@@ -41,4 +42,24 @@ test_expect_success 'rebase -m' '
 
 '
 
+test_expect_success 'rebase --stat' '
+        git reset --hard start
+        git rebase --stat master >diffstat.txt &&
+        grep "^ fileX |  *1 +$" diffstat.txt
+'
+
+test_expect_success 'rebase w/config rebase.stat' '
+        git reset --hard start
+        git config rebase.stat true &&
+        git rebase master >diffstat.txt &&
+        grep "^ fileX |  *1 +$" diffstat.txt
+'
+
+test_expect_success 'rebase -n overrides config rebase.stat config' '
+        git reset --hard start
+        git config rebase.stat true &&
+        git rebase -n master >diffstat.txt &&
+        ! grep "^ fileX |  *1 +$" diffstat.txt
+'
+
 test_done
diff --git a/t/t3409-rebase-hook.sh b/t/t3409-rebase-hook.sh
deleted file mode 100755
index 098b75507b..0000000000
--- a/t/t3409-rebase-hook.sh
+++ /dev/null
@@ -1,146 +0,0 @@
-#!/bin/sh
-
-test_description='git rebase with its hook(s)'
-
-. ./test-lib.sh
-
-test_expect_success setup '
-	echo hello >file &&
-	git add file &&
-	test_tick &&
-	git commit -m initial &&
-	echo goodbye >file &&
-	git add file &&
-	test_tick &&
-	git commit -m second &&
-	git checkout -b side HEAD^ &&
-	echo world >git &&
-	git add git &&
-	test_tick &&
-	git commit -m side &&
-	git checkout master &&
-	git log --pretty=oneline --abbrev-commit --graph --all &&
-	git branch test side
-'
-
-test_expect_success 'rebase' '
-	git checkout test &&
-	git reset --hard side &&
-	git rebase master &&
-	test "z$(cat git)" = zworld
-'
-
-test_expect_success 'rebase -i' '
-	git checkout test &&
-	git reset --hard side &&
-	EDITOR=true git rebase -i master &&
-	test "z$(cat git)" = zworld
-'
-
-test_expect_success 'setup pre-rebase hook' '
-	mkdir -p .git/hooks &&
-	cat >.git/hooks/pre-rebase <<EOF &&
-#!$SHELL_PATH
-echo "\$1,\$2" >.git/PRE-REBASE-INPUT
-EOF
-	chmod +x .git/hooks/pre-rebase
-'
-
-test_expect_success 'pre-rebase hook gets correct input (1)' '
-	git checkout test &&
-	git reset --hard side &&
-	git rebase master &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
-
-'
-
-test_expect_success 'pre-rebase hook gets correct input (2)' '
-	git checkout test &&
-	git reset --hard side &&
-	git rebase master test &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
-'
-
-test_expect_success 'pre-rebase hook gets correct input (3)' '
-	git checkout test &&
-	git reset --hard side &&
-	git checkout master &&
-	git rebase master test &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
-'
-
-test_expect_success 'pre-rebase hook gets correct input (4)' '
-	git checkout test &&
-	git reset --hard side &&
-	EDITOR=true git rebase -i master &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
-
-'
-
-test_expect_success 'pre-rebase hook gets correct input (5)' '
-	git checkout test &&
-	git reset --hard side &&
-	EDITOR=true git rebase -i master test &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
-'
-
-test_expect_success 'pre-rebase hook gets correct input (6)' '
-	git checkout test &&
-	git reset --hard side &&
-	git checkout master &&
-	EDITOR=true git rebase -i master test &&
-	test "z$(cat git)" = zworld &&
-	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
-'
-
-test_expect_success 'setup pre-rebase hook that fails' '
-	mkdir -p .git/hooks &&
-	cat >.git/hooks/pre-rebase <<EOF &&
-#!$SHELL_PATH
-false
-EOF
-	chmod +x .git/hooks/pre-rebase
-'
-
-test_expect_success 'pre-rebase hook stops rebase (1)' '
-	git checkout test &&
-	git reset --hard side &&
-	test_must_fail git rebase master &&
-	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
-	test 0 = $(git rev-list HEAD...side | wc -l)
-'
-
-test_expect_success 'pre-rebase hook stops rebase (2)' '
-	git checkout test &&
-	git reset --hard side &&
-	(
-		EDITOR=:
-		export EDITOR
-		test_must_fail git rebase -i master
-	) &&
-	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
-	test 0 = $(git rev-list HEAD...side | wc -l)
-'
-
-test_expect_success 'rebase --no-verify overrides pre-rebase (1)' '
-	git checkout test &&
-	git reset --hard side &&
-	git rebase --no-verify master &&
-	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
-	test "z$(cat git)" = zworld
-'
-
-test_expect_success 'rebase --no-verify overrides pre-rebase (2)' '
-	git checkout test &&
-	git reset --hard side &&
-	EDITOR=true git rebase --no-verify -i master &&
-	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
-	test "z$(cat git)" = zworld
-'
-
-test_done
diff --git a/t/t3413-rebase-hook.sh b/t/t3413-rebase-hook.sh
new file mode 100755
index 0000000000..098b75507b
--- /dev/null
+++ b/t/t3413-rebase-hook.sh
@@ -0,0 +1,146 @@
+#!/bin/sh
+
+test_description='git rebase with its hook(s)'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+	echo hello >file &&
+	git add file &&
+	test_tick &&
+	git commit -m initial &&
+	echo goodbye >file &&
+	git add file &&
+	test_tick &&
+	git commit -m second &&
+	git checkout -b side HEAD^ &&
+	echo world >git &&
+	git add git &&
+	test_tick &&
+	git commit -m side &&
+	git checkout master &&
+	git log --pretty=oneline --abbrev-commit --graph --all &&
+	git branch test side
+'
+
+test_expect_success 'rebase' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master &&
+	test "z$(cat git)" = zworld
+'
+
+test_expect_success 'rebase -i' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master &&
+	test "z$(cat git)" = zworld
+'
+
+test_expect_success 'setup pre-rebase hook' '
+	mkdir -p .git/hooks &&
+	cat >.git/hooks/pre-rebase <<EOF &&
+#!$SHELL_PATH
+echo "\$1,\$2" >.git/PRE-REBASE-INPUT
+EOF
+	chmod +x .git/hooks/pre-rebase
+'
+
+test_expect_success 'pre-rebase hook gets correct input (1)' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
+
+'
+
+test_expect_success 'pre-rebase hook gets correct input (2)' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (3)' '
+	git checkout test &&
+	git reset --hard side &&
+	git checkout master &&
+	git rebase master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (4)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
+
+'
+
+test_expect_success 'pre-rebase hook gets correct input (5)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (6)' '
+	git checkout test &&
+	git reset --hard side &&
+	git checkout master &&
+	EDITOR=true git rebase -i master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'setup pre-rebase hook that fails' '
+	mkdir -p .git/hooks &&
+	cat >.git/hooks/pre-rebase <<EOF &&
+#!$SHELL_PATH
+false
+EOF
+	chmod +x .git/hooks/pre-rebase
+'
+
+test_expect_success 'pre-rebase hook stops rebase (1)' '
+	git checkout test &&
+	git reset --hard side &&
+	test_must_fail git rebase master &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test 0 = $(git rev-list HEAD...side | wc -l)
+'
+
+test_expect_success 'pre-rebase hook stops rebase (2)' '
+	git checkout test &&
+	git reset --hard side &&
+	(
+		EDITOR=:
+		export EDITOR
+		test_must_fail git rebase -i master
+	) &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test 0 = $(git rev-list HEAD...side | wc -l)
+'
+
+test_expect_success 'rebase --no-verify overrides pre-rebase (1)' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase --no-verify master &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test "z$(cat git)" = zworld
+'
+
+test_expect_success 'rebase --no-verify overrides pre-rebase (2)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase --no-verify -i master &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test "z$(cat git)" = zworld
+'
+
+test_done
diff --git a/t/t3505-cherry-pick-empty.sh b/t/t3505-cherry-pick-empty.sh
new file mode 100755
index 0000000000..9aaeabd972
--- /dev/null
+++ b/t/t3505-cherry-pick-empty.sh
@@ -0,0 +1,33 @@
+#!/bin/sh
+
+test_description='test cherry-picking an empty commit'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+
+	echo first > file1 &&
+	git add file1 &&
+	test_tick &&
+	git commit -m "first" &&
+
+	git checkout -b empty-branch &&
+	test_tick &&
+	git commit --allow-empty -m "empty"
+
+'
+
+test_expect_code 1 'cherry-pick an empty commit' '
+
+	git checkout master &&
+	git cherry-pick empty-branch
+
+'
+
+test_expect_success 'index lockfile was removed' '
+
+	test ! -f .git/index.lock
+
+'
+
+test_done
diff --git a/t/t4002-diff-basic.sh b/t/t4002-diff-basic.sh
index cc3681f161..18695ce821 100755
--- a/t/t4002-diff-basic.sh
+++ b/t/t4002-diff-basic.sh
@@ -258,4 +258,12 @@ test_expect_success \
     git diff-tree -r -R $tree_A $tree_B >.test-b &&
     cmp -s .test-a .test-b'
 
+test_expect_success \
+    'diff can read from stdin' \
+    'test_must_fail git diff --no-index -- MN - < NN |
+        grep -v "^index" | sed "s#/-#/NN#" >.test-a &&
+    test_must_fail git diff --no-index -- MN NN |
+        grep -v "^index" >.test-b &&
+    test_cmp .test-a .test-b'
+
 test_done
diff --git a/t/t4012-diff-binary.sh b/t/t4012-diff-binary.sh
index 3cf5b5c4ea..f64aa48d24 100755
--- a/t/t4012-diff-binary.sh
+++ b/t/t4012-diff-binary.sh
@@ -87,7 +87,7 @@ nul_to_q() {
 
 test_expect_success 'diff --no-index with binary creation' '
 	echo Q | q_to_nul >binary &&
-	(:# hide error code from diff, which just indicates differences
+	(: hide error code from diff, which just indicates differences
 	 git diff --binary --no-index /dev/null binary >current ||
 	 true
 	) &&
diff --git a/t/t4013-diff-various.sh b/t/t4013-diff-various.sh
index 9c709022ef..9cd5a6e685 100755
--- a/t/t4013-diff-various.sh
+++ b/t/t4013-diff-various.sh
@@ -207,6 +207,10 @@ log --root -c --patch-with-stat --summary master
 log --root --cc --patch-with-stat --summary master
 log -SF master
 log -SF -p master
+log --decorate --all
+
+rev-list --parents HEAD
+rev-list --children HEAD
 
 whatchanged master
 whatchanged -p master
@@ -268,6 +272,7 @@ diff --no-index --name-status dir2 dir
 diff --no-index --name-status -- dir2 dir
 diff --no-index dir dir3
 diff master master^ side
+diff --dirstat master~1 master~2
 EOF
 
 test_done
diff --git a/t/t4013/diff.diff_--dirstat_master~1_master~2 b/t/t4013/diff.diff_--dirstat_master~1_master~2
new file mode 100644
index 0000000000..b672e1ca63
--- /dev/null
+++ b/t/t4013/diff.diff_--dirstat_master~1_master~2
@@ -0,0 +1,3 @@
+$ git diff --dirstat master~1 master~2
+  40.0% dir/
+$
diff --git a/t/t4013/diff.log_--decorate_--all b/t/t4013/diff.log_--decorate_--all
new file mode 100644
index 0000000000..12da8ac07d
--- /dev/null
+++ b/t/t4013/diff.log_--decorate_--all
@@ -0,0 +1,34 @@
+$ git log --decorate --all
+commit 59d314ad6f356dd08601a4cd5e530381da3e3c64 (refs/heads/master)
+Merge: 9a6d494 c7a2ab9
+Author: A U Thor <author@example.com>
+Date:   Mon Jun 26 00:04:00 2006 +0000
+
+    Merge branch 'side'
+
+commit c7a2ab9e8eac7b117442a607d5a9b3950ae34d5a (refs/heads/side)
+Author: A U Thor <author@example.com>
+Date:   Mon Jun 26 00:03:00 2006 +0000
+
+    Side
+
+commit 9a6d4949b6b76956d9d5e26f2791ec2ceff5fdc0
+Author: A U Thor <author@example.com>
+Date:   Mon Jun 26 00:02:00 2006 +0000
+
+    Third
+
+commit 1bde4ae5f36c8d9abe3a0fce0c6aab3c4a12fe44
+Author: A U Thor <author@example.com>
+Date:   Mon Jun 26 00:01:00 2006 +0000
+
+    Second
+    
+    This is the second commit.
+
+commit 444ac553ac7612cc88969031b02b3767fb8a353a (refs/heads/initial)
+Author: A U Thor <author@example.com>
+Date:   Mon Jun 26 00:00:00 2006 +0000
+
+    Initial
+$
diff --git a/t/t4013/diff.rev-list_--children_HEAD b/t/t4013/diff.rev-list_--children_HEAD
new file mode 100644
index 0000000000..e7f17d5aa0
--- /dev/null
+++ b/t/t4013/diff.rev-list_--children_HEAD
@@ -0,0 +1,7 @@
+$ git rev-list --children HEAD
+59d314ad6f356dd08601a4cd5e530381da3e3c64
+c7a2ab9e8eac7b117442a607d5a9b3950ae34d5a 59d314ad6f356dd08601a4cd5e530381da3e3c64
+9a6d4949b6b76956d9d5e26f2791ec2ceff5fdc0 59d314ad6f356dd08601a4cd5e530381da3e3c64
+1bde4ae5f36c8d9abe3a0fce0c6aab3c4a12fe44 9a6d4949b6b76956d9d5e26f2791ec2ceff5fdc0
+444ac553ac7612cc88969031b02b3767fb8a353a 1bde4ae5f36c8d9abe3a0fce0c6aab3c4a12fe44 c7a2ab9e8eac7b117442a607d5a9b3950ae34d5a
+$
diff --git a/t/t4013/diff.rev-list_--parents_HEAD b/t/t4013/diff.rev-list_--parents_HEAD
new file mode 100644
index 0000000000..65d2a80208
--- /dev/null
+++ b/t/t4013/diff.rev-list_--parents_HEAD
@@ -0,0 +1,7 @@
+$ git rev-list --parents HEAD
+59d314ad6f356dd08601a4cd5e530381da3e3c64 9a6d4949b6b76956d9d5e26f2791ec2ceff5fdc0 c7a2ab9e8eac7b117442a607d5a9b3950ae34d5a
+c7a2ab9e8eac7b117442a607d5a9b3950ae34d5a 444ac553ac7612cc88969031b02b3767fb8a353a
+9a6d4949b6b76956d9d5e26f2791ec2ceff5fdc0 1bde4ae5f36c8d9abe3a0fce0c6aab3c4a12fe44
+1bde4ae5f36c8d9abe3a0fce0c6aab3c4a12fe44 444ac553ac7612cc88969031b02b3767fb8a353a
+444ac553ac7612cc88969031b02b3767fb8a353a
+$
diff --git a/t/t4014-format-patch.sh b/t/t4014-format-patch.sh
index f045898fe3..ebfc4a6590 100755
--- a/t/t4014-format-patch.sh
+++ b/t/t4014-format-patch.sh
@@ -138,56 +138,243 @@ test_expect_success 'multiple files' '
 	ls patches/0001-Side-changes-1.patch patches/0002-Side-changes-2.patch patches/0003-Side-changes-3-with-n-backslash-n-in-it.patch
 '
 
-test_expect_success 'thread' '
+check_threading () {
+	expect="$1" &&
+	shift &&
+	(git format-patch --stdout "$@"; echo $? > status.out) |
+	# Prints everything between the Message-ID and In-Reply-To,
+	# and replaces all Message-ID-lookalikes by a sequence number
+	perl -ne '
+		if (/^(message-id|references|in-reply-to)/i) {
+			$printing = 1;
+		} elsif (/^\S/) {
+			$printing = 0;
+		}
+		if ($printing) {
+			$h{$1}=$i++ if (/<([^>]+)>/ and !exists $h{$1});
+			for $k (keys %h) {s/$k/$h{$k}/};
+			print;
+		}
+		print "---\n" if /^From /i;
+	' > actual &&
+	test 0 = "$(cat status.out)" &&
+	test_cmp "$expect" actual
+}
+
+cat >> expect.no-threading <<EOF
+---
+---
+---
+EOF
 
-	rm -rf patches/ &&
+test_expect_success 'no threading' '
 	git checkout side &&
-	git format-patch --thread -o patches/ master &&
-	FIRST_MID=$(grep "Message-Id:" patches/0001-* | sed "s/^[^<]*\(<[^>]*>\).*$/\1/") &&
-	for i in patches/0002-* patches/0003-*
-	do
-	  grep "References: $FIRST_MID" $i &&
-	  grep "In-Reply-To: $FIRST_MID" $i || break
-	done
+	check_threading expect.no-threading master
 '
 
-test_expect_success 'thread in-reply-to' '
+cat > expect.thread <<EOF
+---
+Message-Id: <0>
+---
+Message-Id: <1>
+In-Reply-To: <0>
+References: <0>
+---
+Message-Id: <2>
+In-Reply-To: <0>
+References: <0>
+EOF
 
-	rm -rf patches/ &&
-	git checkout side &&
-	git format-patch --in-reply-to="<test.message>" --thread -o patches/ master &&
-	FIRST_MID="<test.message>" &&
-	for i in patches/*
-	do
-	  grep "References: $FIRST_MID" $i &&
-	  grep "In-Reply-To: $FIRST_MID" $i || break
-	done
+test_expect_success 'thread' '
+	check_threading expect.thread --thread master
 '
 
-test_expect_success 'thread cover-letter' '
+cat > expect.in-reply-to <<EOF
+---
+Message-Id: <0>
+In-Reply-To: <1>
+References: <1>
+---
+Message-Id: <2>
+In-Reply-To: <1>
+References: <1>
+---
+Message-Id: <3>
+In-Reply-To: <1>
+References: <1>
+EOF
 
-	rm -rf patches/ &&
-	git checkout side &&
-	git format-patch --cover-letter --thread -o patches/ master &&
-	FIRST_MID=$(grep "Message-Id:" patches/0000-* | sed "s/^[^<]*\(<[^>]*>\).*$/\1/") &&
-	for i in patches/0001-* patches/0002-* patches/0003-*
-	do
-	  grep "References: $FIRST_MID" $i &&
-	  grep "In-Reply-To: $FIRST_MID" $i || break
-	done
+test_expect_success 'thread in-reply-to' '
+	check_threading expect.in-reply-to --in-reply-to="<test.message>" \
+		--thread master
 '
 
+cat > expect.cover-letter <<EOF
+---
+Message-Id: <0>
+---
+Message-Id: <1>
+In-Reply-To: <0>
+References: <0>
+---
+Message-Id: <2>
+In-Reply-To: <0>
+References: <0>
+---
+Message-Id: <3>
+In-Reply-To: <0>
+References: <0>
+EOF
+
+test_expect_success 'thread cover-letter' '
+	check_threading expect.cover-letter --cover-letter --thread master
+'
+
+cat > expect.cl-irt <<EOF
+---
+Message-Id: <0>
+In-Reply-To: <1>
+References: <1>
+---
+Message-Id: <2>
+In-Reply-To: <0>
+References: <1>
+	<0>
+---
+Message-Id: <3>
+In-Reply-To: <0>
+References: <1>
+	<0>
+---
+Message-Id: <4>
+In-Reply-To: <0>
+References: <1>
+	<0>
+EOF
+
 test_expect_success 'thread cover-letter in-reply-to' '
+	check_threading expect.cl-irt --cover-letter \
+		--in-reply-to="<test.message>" --thread master
+'
 
-	rm -rf patches/ &&
-	git checkout side &&
-	git format-patch --cover-letter --in-reply-to="<test.message>" --thread -o patches/ master &&
-	FIRST_MID="<test.message>" &&
-	for i in patches/*
-	do
-	  grep "References: $FIRST_MID" $i &&
-	  grep "In-Reply-To: $FIRST_MID" $i || break
-	done
+test_expect_success 'thread explicit shallow' '
+	check_threading expect.cl-irt --cover-letter \
+		--in-reply-to="<test.message>" --thread=shallow master
+'
+
+cat > expect.deep <<EOF
+---
+Message-Id: <0>
+---
+Message-Id: <1>
+In-Reply-To: <0>
+References: <0>
+---
+Message-Id: <2>
+In-Reply-To: <1>
+References: <0>
+	<1>
+EOF
+
+test_expect_success 'thread deep' '
+	check_threading expect.deep --thread=deep master
+'
+
+cat > expect.deep-irt <<EOF
+---
+Message-Id: <0>
+In-Reply-To: <1>
+References: <1>
+---
+Message-Id: <2>
+In-Reply-To: <0>
+References: <1>
+	<0>
+---
+Message-Id: <3>
+In-Reply-To: <2>
+References: <1>
+	<0>
+	<2>
+EOF
+
+test_expect_success 'thread deep in-reply-to' '
+	check_threading expect.deep-irt  --thread=deep \
+		--in-reply-to="<test.message>" master
+'
+
+cat > expect.deep-cl <<EOF
+---
+Message-Id: <0>
+---
+Message-Id: <1>
+In-Reply-To: <0>
+References: <0>
+---
+Message-Id: <2>
+In-Reply-To: <1>
+References: <0>
+	<1>
+---
+Message-Id: <3>
+In-Reply-To: <2>
+References: <0>
+	<1>
+	<2>
+EOF
+
+test_expect_success 'thread deep cover-letter' '
+	check_threading expect.deep-cl --cover-letter --thread=deep master
+'
+
+cat > expect.deep-cl-irt <<EOF
+---
+Message-Id: <0>
+In-Reply-To: <1>
+References: <1>
+---
+Message-Id: <2>
+In-Reply-To: <0>
+References: <1>
+	<0>
+---
+Message-Id: <3>
+In-Reply-To: <2>
+References: <1>
+	<0>
+	<2>
+---
+Message-Id: <4>
+In-Reply-To: <3>
+References: <1>
+	<0>
+	<2>
+	<3>
+EOF
+
+test_expect_success 'thread deep cover-letter in-reply-to' '
+	check_threading expect.deep-cl-irt --cover-letter \
+		--in-reply-to="<test.message>" --thread=deep master
+'
+
+test_expect_success 'thread via config' '
+	git config format.thread true &&
+	check_threading expect.thread master
+'
+
+test_expect_success 'thread deep via config' '
+	git config format.thread deep &&
+	check_threading expect.deep master
+'
+
+test_expect_success 'thread config + override' '
+	git config format.thread deep &&
+	check_threading expect.thread --thread master
+'
+
+test_expect_success 'thread config + --no-thread' '
+	git config format.thread deep &&
+	check_threading expect.no-threading --no-thread master
 '
 
 test_expect_success 'excessive subject' '
diff --git a/t/t4017-quiet.sh b/t/t4017-quiet.sh
deleted file mode 100755
index e747e84227..0000000000
--- a/t/t4017-quiet.sh
+++ /dev/null
@@ -1,80 +0,0 @@
-#!/bin/sh
-
-test_description='Return value of diffs'
-
-. ./test-lib.sh
-
-test_expect_success 'setup' '
-	echo 1 >a &&
-	git add . &&
-	git commit -m first &&
-	echo 2 >b &&
-	git add . &&
-	git commit -a -m second
-'
-
-test_expect_success 'git diff-tree HEAD^ HEAD' '
-	git diff-tree --quiet HEAD^ HEAD >cnt
-	test $? = 1 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-tree HEAD^ HEAD -- a' '
-	git diff-tree --quiet HEAD^ HEAD -- a >cnt
-	test $? = 0 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-tree HEAD^ HEAD -- b' '
-	git diff-tree --quiet HEAD^ HEAD -- b >cnt
-	test $? = 1 && test $(wc -l <cnt) = 0
-'
-# this diff outputs one line: sha1 of the given head
-test_expect_success 'echo HEAD | git diff-tree --stdin' '
-	echo $(git rev-parse HEAD) | git diff-tree --quiet --stdin >cnt
-	test $? = 1 && test $(wc -l <cnt) = 1
-'
-test_expect_success 'git diff-tree HEAD HEAD' '
-	git diff-tree --quiet HEAD HEAD >cnt
-	test $? = 0 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-files' '
-	git diff-files --quiet >cnt
-	test $? = 0 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-index --cached HEAD' '
-	git diff-index --quiet --cached HEAD >cnt
-	test $? = 0 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-index --cached HEAD^' '
-	git diff-index --quiet --cached HEAD^ >cnt
-	test $? = 1 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-index --cached HEAD^' '
-	echo text >>b &&
-	echo 3 >c &&
-	git add . && {
-		git diff-index --quiet --cached HEAD^ >cnt
-		test $? = 1 && test $(wc -l <cnt) = 0
-	}
-'
-test_expect_success 'git diff-tree -Stext HEAD^ HEAD -- b' '
-	git commit -m "text in b" && {
-		git diff-tree --quiet -Stext HEAD^ HEAD -- b >cnt
-		test $? = 1 && test $(wc -l <cnt) = 0
-	}
-'
-test_expect_success 'git diff-tree -Snot-found HEAD^ HEAD -- b' '
-	git diff-tree --quiet -Snot-found HEAD^ HEAD -- b >cnt
-	test $? = 0 && test $(wc -l <cnt) = 0
-'
-test_expect_success 'git diff-files' '
-	echo 3 >>c && {
-		git diff-files --quiet >cnt
-		test $? = 1 && test $(wc -l <cnt) = 0
-	}
-'
-test_expect_success 'git diff-index --cached HEAD' '
-	git update-index c && {
-		git diff-index --quiet --cached HEAD >cnt
-		test $? = 1 && test $(wc -l <cnt) = 0
-	}
-'
-
-test_done
diff --git a/t/t4021-format-patch-signer-mime.sh b/t/t4021-format-patch-signer-mime.sh
deleted file mode 100755
index ba43f18549..0000000000
--- a/t/t4021-format-patch-signer-mime.sh
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/bin/sh
-
-test_description='format-patch -s should force MIME encoding as needed'
-
-. ./test-lib.sh
-
-test_expect_success setup '
-
-	>F &&
-	git add F &&
-	git commit -m initial &&
-	echo new line >F &&
-
-	test_tick &&
-	git commit -m "This adds some lines to F" F
-
-'
-
-test_expect_success 'format normally' '
-
-	git format-patch --stdout -1 >output &&
-	! grep Content-Type output
-
-'
-
-test_expect_success 'format with signoff without funny signer name' '
-
-	git format-patch -s --stdout -1 >output &&
-	! grep Content-Type output
-
-'
-
-test_expect_success 'format with non ASCII signer name' '
-
-	GIT_COMMITTER_NAME="はまの ふにおう" \
-	git format-patch -s --stdout -1 >output &&
-	grep Content-Type output
-
-'
-
-test_expect_success 'attach and signoff do not duplicate mime headers' '
-
-	GIT_COMMITTER_NAME="はまの ふにおう" \
-	git format-patch -s --stdout -1 --attach >output &&
-	test `grep -ci ^MIME-Version: output` = 1
-
-'
-
-test_done
-
diff --git a/t/t4035-diff-quiet.sh b/t/t4035-diff-quiet.sh
new file mode 100755
index 0000000000..e747e84227
--- /dev/null
+++ b/t/t4035-diff-quiet.sh
@@ -0,0 +1,80 @@
+#!/bin/sh
+
+test_description='Return value of diffs'
+
+. ./test-lib.sh
+
+test_expect_success 'setup' '
+	echo 1 >a &&
+	git add . &&
+	git commit -m first &&
+	echo 2 >b &&
+	git add . &&
+	git commit -a -m second
+'
+
+test_expect_success 'git diff-tree HEAD^ HEAD' '
+	git diff-tree --quiet HEAD^ HEAD >cnt
+	test $? = 1 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-tree HEAD^ HEAD -- a' '
+	git diff-tree --quiet HEAD^ HEAD -- a >cnt
+	test $? = 0 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-tree HEAD^ HEAD -- b' '
+	git diff-tree --quiet HEAD^ HEAD -- b >cnt
+	test $? = 1 && test $(wc -l <cnt) = 0
+'
+# this diff outputs one line: sha1 of the given head
+test_expect_success 'echo HEAD | git diff-tree --stdin' '
+	echo $(git rev-parse HEAD) | git diff-tree --quiet --stdin >cnt
+	test $? = 1 && test $(wc -l <cnt) = 1
+'
+test_expect_success 'git diff-tree HEAD HEAD' '
+	git diff-tree --quiet HEAD HEAD >cnt
+	test $? = 0 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-files' '
+	git diff-files --quiet >cnt
+	test $? = 0 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-index --cached HEAD' '
+	git diff-index --quiet --cached HEAD >cnt
+	test $? = 0 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-index --cached HEAD^' '
+	git diff-index --quiet --cached HEAD^ >cnt
+	test $? = 1 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-index --cached HEAD^' '
+	echo text >>b &&
+	echo 3 >c &&
+	git add . && {
+		git diff-index --quiet --cached HEAD^ >cnt
+		test $? = 1 && test $(wc -l <cnt) = 0
+	}
+'
+test_expect_success 'git diff-tree -Stext HEAD^ HEAD -- b' '
+	git commit -m "text in b" && {
+		git diff-tree --quiet -Stext HEAD^ HEAD -- b >cnt
+		test $? = 1 && test $(wc -l <cnt) = 0
+	}
+'
+test_expect_success 'git diff-tree -Snot-found HEAD^ HEAD -- b' '
+	git diff-tree --quiet -Snot-found HEAD^ HEAD -- b >cnt
+	test $? = 0 && test $(wc -l <cnt) = 0
+'
+test_expect_success 'git diff-files' '
+	echo 3 >>c && {
+		git diff-files --quiet >cnt
+		test $? = 1 && test $(wc -l <cnt) = 0
+	}
+'
+test_expect_success 'git diff-index --cached HEAD' '
+	git update-index c && {
+		git diff-index --quiet --cached HEAD >cnt
+		test $? = 1 && test $(wc -l <cnt) = 0
+	}
+'
+
+test_done
diff --git a/t/t4036-format-patch-signer-mime.sh b/t/t4036-format-patch-signer-mime.sh
new file mode 100755
index 0000000000..ba43f18549
--- /dev/null
+++ b/t/t4036-format-patch-signer-mime.sh
@@ -0,0 +1,50 @@
+#!/bin/sh
+
+test_description='format-patch -s should force MIME encoding as needed'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+
+	>F &&
+	git add F &&
+	git commit -m initial &&
+	echo new line >F &&
+
+	test_tick &&
+	git commit -m "This adds some lines to F" F
+
+'
+
+test_expect_success 'format normally' '
+
+	git format-patch --stdout -1 >output &&
+	! grep Content-Type output
+
+'
+
+test_expect_success 'format with signoff without funny signer name' '
+
+	git format-patch -s --stdout -1 >output &&
+	! grep Content-Type output
+
+'
+
+test_expect_success 'format with non ASCII signer name' '
+
+	GIT_COMMITTER_NAME="はまの ふにおう" \
+	git format-patch -s --stdout -1 >output &&
+	grep Content-Type output
+
+'
+
+test_expect_success 'attach and signoff do not duplicate mime headers' '
+
+	GIT_COMMITTER_NAME="はまの ふにおう" \
+	git format-patch -s --stdout -1 --attach >output &&
+	test `grep -ci ^MIME-Version: output` = 1
+
+'
+
+test_done
+
diff --git a/t/t4202-log.sh b/t/t4202-log.sh
index 6d43459dd1..b98619035c 100755
--- a/t/t4202-log.sh
+++ b/t/t4202-log.sh
@@ -174,5 +174,153 @@ test_expect_success 'log --grep -i' '
 	test_cmp expect actual
 '
 
+cat > expect <<EOF
+* Second
+* sixth
+* fifth
+* fourth
+* third
+* second
+* initial
+EOF
+
+test_expect_success 'simple log --graph' '
+	git log --graph --pretty=tformat:%s >actual &&
+	test_cmp expect actual
+'
+
+test_expect_success 'set up merge history' '
+	git checkout -b side HEAD~4 &&
+	test_commit side-1 1 1 &&
+	test_commit side-2 2 2 &&
+	git checkout master &&
+	git merge side
+'
+
+cat > expect <<\EOF
+*   Merge branch 'side'
+|\
+| * side-2
+| * side-1
+* | Second
+* | sixth
+* | fifth
+* | fourth
+|/
+* third
+* second
+* initial
+EOF
+
+test_expect_success 'log --graph with merge' '
+	git log --graph --date-order --pretty=tformat:%s |
+		sed "s/ *$//" >actual &&
+	test_cmp expect actual
+'
+
+cat > expect <<\EOF
+*   commit master
+|\  Merge: A B
+| | Author: A U Thor <author@example.com>
+| |
+| |     Merge branch 'side'
+| |
+| * commit side
+| | Author: A U Thor <author@example.com>
+| |
+| |     side-2
+| |
+| * commit tags/side-1
+| | Author: A U Thor <author@example.com>
+| |
+| |     side-1
+| |
+* | commit master~1
+| | Author: A U Thor <author@example.com>
+| |
+| |     Second
+| |
+* | commit master~2
+| | Author: A U Thor <author@example.com>
+| |
+| |     sixth
+| |
+* | commit master~3
+| | Author: A U Thor <author@example.com>
+| |
+| |     fifth
+| |
+* | commit master~4
+|/  Author: A U Thor <author@example.com>
+|
+|       fourth
+|
+* commit tags/side-1~1
+| Author: A U Thor <author@example.com>
+|
+|     third
+|
+* commit tags/side-1~2
+| Author: A U Thor <author@example.com>
+|
+|     second
+|
+* commit tags/side-1~3
+  Author: A U Thor <author@example.com>
+
+      initial
+EOF
+
+test_expect_success 'log --graph with full output' '
+	git log --graph --date-order --pretty=short |
+		git name-rev --name-only --stdin |
+		sed "s/Merge:.*/Merge: A B/;s/ *$//" >actual &&
+	test_cmp expect actual
+'
+
+test_expect_success 'set up more tangled history' '
+	git checkout -b tangle HEAD~6 &&
+	test_commit tangle-a tangle-a a &&
+	git merge master~3 &&
+	git merge side~1 &&
+	git checkout master &&
+	git merge tangle
+'
+
+cat > expect <<\EOF
+*   Merge branch 'tangle'
+|\
+| *   Merge branch 'side' (early part) into tangle
+| |\
+| * \   Merge branch 'master' (early part) into tangle
+| |\ \
+| * | | tangle-a
+* | | |   Merge branch 'side'
+|\ \ \ \
+| * | | | side-2
+| | | |/
+| | |/|
+| |/| |
+| * | | side-1
+* | | | Second
+* | | | sixth
+| | |/
+| |/|
+|/| |
+* | | fifth
+* | | fourth
+|/ /
+* | third
+|/
+* second
+* initial
+EOF
+
+test_expect_success 'log --graph with merge' '
+	git log --graph --date-order --pretty=tformat:%s |
+		sed "s/ *$//" >actual &&
+	test_cmp expect actual
+'
+
 test_done
 
diff --git a/t/t4204-patch-id.sh b/t/t4204-patch-id.sh
new file mode 100755
index 0000000000..04f7bae850
--- /dev/null
+++ b/t/t4204-patch-id.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+
+test_description='git patch-id'
+
+. ./test-lib.sh
+
+test_expect_success 'setup' '
+	test_commit initial foo a &&
+	test_commit first foo b &&
+	git checkout -b same HEAD^ &&
+	test_commit same-msg foo b &&
+	git checkout -b notsame HEAD^ &&
+	test_commit notsame-msg foo c
+'
+
+test_expect_success 'patch-id output is well-formed' '
+	git log -p -1 | git patch-id > output &&
+	grep "^[a-f0-9]\{40\} $(git rev-parse HEAD)$" output
+'
+
+get_patch_id () {
+	git log -p -1 "$1" | git patch-id |
+		sed "s# .*##" > patch-id_"$1"
+}
+
+test_expect_success 'patch-id detects equality' '
+	get_patch_id master &&
+	get_patch_id same &&
+	test_cmp patch-id_master patch-id_same
+'
+
+test_expect_success 'patch-id detects inequality' '
+	get_patch_id master &&
+	get_patch_id notsame &&
+	! test_cmp patch-id_master patch-id_notsame
+'
+
+test_done
diff --git a/t/t5000-tar-tree.sh b/t/t5000-tar-tree.sh
index b7e362834b..e1ed073f95 100755
--- a/t/t5000-tar-tree.sh
+++ b/t/t5000-tar-tree.sh
@@ -76,7 +76,7 @@ test_expect_success \
 
 test_expect_success \
     'git archive vs. git tar-tree' \
-    'diff b.tar b2.tar'
+    'test_cmp b.tar b2.tar'
 
 test_expect_success \
     'git archive in a bare repo' \
@@ -96,12 +96,12 @@ test_expect_success \
      "$TAR" xf b.tar -C extract a/a &&
      test-chmtime -v +0 extract/a/a |cut -f 1 >b.mtime &&
      echo "1117231200" >expected.mtime &&
-     diff expected.mtime b.mtime'
+     test_cmp expected.mtime b.mtime'
 
 test_expect_success \
     'git get-tar-commit-id' \
     'git get-tar-commit-id <b.tar >b.commitid &&
-     diff .git/$(git symbolic-ref HEAD) b.commitid'
+     test_cmp .git/$(git symbolic-ref HEAD) b.commitid'
 
 test_expect_success \
     'extract tar archive' \
@@ -110,7 +110,7 @@ test_expect_success \
 test_expect_success \
     'validate filenames' \
     '(cd b/a && find .) | sort >b.lst &&
-     diff a.lst b.lst'
+     test_cmp a.lst b.lst'
 
 test_expect_success \
     'validate file contents' \
@@ -127,7 +127,7 @@ test_expect_success \
 test_expect_success \
     'validate filenames with prefix' \
     '(cd c/prefix/a && find .) | sort >c.lst &&
-     diff a.lst c.lst'
+     test_cmp a.lst c.lst'
 
 test_expect_success \
     'validate file contents with prefix' \
@@ -148,8 +148,8 @@ test_expect_success \
      'validate substfile contents' \
      'git log --max-count=1 "--pretty=format:A${SUBSTFORMAT}O" HEAD \
       >f/a/substfile1.expected &&
-      diff f/a/substfile1.expected f/a/substfile1 &&
-      diff a/substfile2 f/a/substfile2
+      test_cmp f/a/substfile1.expected f/a/substfile1 &&
+      test_cmp a/substfile2 f/a/substfile2
 '
 
 test_expect_success \
@@ -160,8 +160,8 @@ test_expect_success \
      'validate substfile contents from archive with prefix' \
      'git log --max-count=1 "--pretty=format:A${SUBSTFORMAT}O" HEAD \
       >g/prefix/a/substfile1.expected &&
-      diff g/prefix/a/substfile1.expected g/prefix/a/substfile1 &&
-      diff a/substfile2 g/prefix/a/substfile2
+      test_cmp g/prefix/a/substfile1.expected g/prefix/a/substfile1 &&
+      test_cmp a/substfile2 g/prefix/a/substfile2
 '
 
 test_expect_success \
@@ -194,7 +194,7 @@ test_expect_success \
 test_expect_success \
     'validate filenames' \
     '(cd d/a && find .) | sort >d.lst &&
-     diff a.lst d.lst'
+     test_cmp a.lst d.lst'
 
 test_expect_success \
     'validate file contents' \
@@ -211,7 +211,7 @@ test_expect_success \
 test_expect_success \
     'validate filenames with prefix' \
     '(cd e/prefix/a && find .) | sort >e.lst &&
-     diff a.lst e.lst'
+     test_cmp a.lst e.lst'
 
 test_expect_success \
     'validate file contents with prefix' \
diff --git a/t/t5403-post-checkout-hook.sh b/t/t5403-post-checkout-hook.sh
index 9b2e1a94c5..5858b868ed 100755
--- a/t/t5403-post-checkout-hook.sh
+++ b/t/t5403-post-checkout-hook.sh
@@ -71,4 +71,18 @@ test_expect_success 'post-checkout receives the right args when not switching br
         test $old = $new -a $flag = 0
 '
 
+if test "$(git config --bool core.filemode)" = true; then
+mkdir -p templates/hooks
+cat >templates/hooks/post-checkout <<'EOF'
+#!/bin/sh
+echo $@ > $GIT_DIR/post-checkout.args
+EOF
+chmod +x templates/hooks/post-checkout
+
+test_expect_success 'post-checkout hook is triggered by clone' '
+	git clone --template=templates . clone3 &&
+	test -f clone3/.git/post-checkout.args
+'
+fi
+
 test_done
diff --git a/t/t5505-remote.sh b/t/t5505-remote.sh
index eb637184a0..5ec668d6d8 100755
--- a/t/t5505-remote.sh
+++ b/t/t5505-remote.sh
@@ -28,7 +28,7 @@ tokens_match () {
 }
 
 check_remote_track () {
-	actual=$(git remote show "$1" | sed -e '1,/Tracked/d') &&
+	actual=$(git remote show "$1" | sed -ne 's|^    \(.*\) tracked$|\1|p')
 	shift &&
 	tokens_match "$*" "$actual"
 }
@@ -136,47 +136,73 @@ EOF
 cat > test/expect << EOF
 * remote origin
   URL: $(pwd)/one
-  Remote branch merged with 'git pull' while on branch master
+  HEAD branch: master
+  Remote branches:
+    master new (next fetch will store in remotes/origin)
+    side   tracked
+  Local branches configured for 'git pull':
+    ahead    merges with remote master
+    master   merges with remote master
+    octopus  merges with remote topic-a
+                and with remote topic-b
+                and with remote topic-c
+    rebase  rebases onto remote master
+  Local refs configured for 'git push':
+    master pushes to master   (local out of date)
+    master pushes to upstream (create)
+* remote two
+  URL: ../two
+  HEAD branch (remote HEAD is ambiguous, may be one of the following):
+    another
     master
-  New remote branch (next fetch will store in remotes/origin)
-    master
-  Tracked remote branches
-    side
-    master
-  Local branches pushed with 'git push'
-    master:upstream
-    +refs/tags/lastbackup
+  Local refs configured for 'git push':
+    ahead  forces to master  (fast forwardable)
+    master pushes to another (up to date)
 EOF
 
 test_expect_success 'show' '
 	(cd test &&
-	 git config --add remote.origin.fetch \
-		refs/heads/master:refs/heads/upstream &&
+	 git config --add remote.origin.fetch refs/heads/master:refs/heads/upstream &&
 	 git fetch &&
+	 git checkout -b ahead origin/master &&
+	 echo 1 >> file &&
+	 test_tick &&
+	 git commit -m update file &&
+	 git checkout master &&
+	 git branch --track octopus origin/master &&
+	 git branch --track rebase origin/master &&
 	 git branch -d -r origin/master &&
+	 git config --add remote.two.url ../two &&
+	 git config branch.rebase.rebase true &&
+	 git config branch.octopus.merge "topic-a topic-b topic-c" &&
 	 (cd ../one &&
 	  echo 1 > file &&
 	  test_tick &&
 	  git commit -m update file) &&
-	 git config remote.origin.push \
-		refs/heads/master:refs/heads/upstream &&
-	 git config --add remote.origin.push \
-		+refs/tags/lastbackup &&
-	 git remote show origin > output &&
+	 git config --add remote.origin.push : &&
+	 git config --add remote.origin.push refs/heads/master:refs/heads/upstream &&
+	 git config --add remote.origin.push +refs/tags/lastbackup &&
+	 git config --add remote.two.push +refs/heads/ahead:refs/heads/master &&
+	 git config --add remote.two.push refs/heads/master:refs/heads/another &&
+	 git remote show origin two > output &&
+	 git branch -d rebase octopus &&
 	 test_cmp expect output)
 '
 
 cat > test/expect << EOF
 * remote origin
   URL: $(pwd)/one
-  Remote branch merged with 'git pull' while on branch master
-    master
-  Tracked remote branches
+  HEAD branch: (not queried)
+  Remote branches: (status not queried)
     master
     side
-  Local branches pushed with 'git push'
-    master:upstream
-    +refs/tags/lastbackup
+  Local branches configured for 'git pull':
+    ahead  merges with remote master
+    master merges with remote master
+  Local refs configured for 'git push' (status not queried):
+    (matching)           pushes to (matching)
+    refs/heads/master    pushes to refs/heads/upstream
+    refs/tags/lastbackup forces to refs/tags/lastbackup
 EOF
 
 test_expect_success 'show -n' '
@@ -197,6 +223,46 @@ test_expect_success 'prune' '
 	 test_must_fail git rev-parse refs/remotes/origin/side)
 '
 
+test_expect_success 'set-head --delete' '
+	(cd test &&
+	 git symbolic-ref refs/remotes/origin/HEAD &&
+	 git remote set-head --delete origin &&
+	 test_must_fail git symbolic-ref refs/remotes/origin/HEAD)
+'
+
+test_expect_success 'set-head --auto' '
+	(cd test &&
+	 git remote set-head --auto origin &&
+	 echo refs/remotes/origin/master >expect &&
+	 git symbolic-ref refs/remotes/origin/HEAD >output &&
+	 test_cmp expect output
+	)
+'
+
+cat >test/expect <<EOF
+error: Multiple remote HEAD branches. Please choose one explicitly with:
+  git remote set-head two another
+  git remote set-head two master
+EOF
+
+test_expect_success 'set-head --auto fails w/multiple HEADs' '
+	(cd test &&
+	 test_must_fail git remote set-head --auto two >output 2>&1 &&
+	test_cmp expect output)
+'
+
+cat >test/expect <<EOF
+refs/remotes/origin/side2
+EOF
+
+test_expect_success 'set-head explicit' '
+	(cd test &&
+	 git remote set-head origin side2 &&
+	 git symbolic-ref refs/remotes/origin/HEAD >output &&
+	 git remote set-head origin master &&
+	 test_cmp expect output)
+'
+
 cat > test/expect << EOF
 Pruning origin
 URL: $(pwd)/one
@@ -343,7 +409,7 @@ test_expect_success '"remote show" does not show symbolic refs' '
 	git clone one three &&
 	(cd three &&
 	 git remote show origin > output &&
-	 ! grep HEAD < output &&
+	 ! grep "^ *HEAD$" < output &&
 	 ! grep -i stale < output)
 
 '
diff --git a/t/t5521-pull-symlink.sh b/t/t5521-pull-symlink.sh
deleted file mode 100755
index 5672b51e2e..0000000000
--- a/t/t5521-pull-symlink.sh
+++ /dev/null
@@ -1,78 +0,0 @@
-#!/bin/sh
-
-test_description='pulling from symlinked subdir'
-
-. ./test-lib.sh
-
-# The scenario we are building:
-#
-#   trash\ directory/
-#     clone-repo/
-#       subdir/
-#         bar
-#     subdir-link -> clone-repo/subdir/
-#
-# The working directory is subdir-link.
-
-mkdir subdir
-echo file >subdir/file
-git add subdir/file
-git commit -q -m file
-git clone -q . clone-repo
-ln -s clone-repo/subdir/ subdir-link
-
-
-# Demonstrate that things work if we just avoid the symlink
-#
-test_expect_success 'pulling from real subdir' '
-	(
-		echo real >subdir/file &&
-		git commit -m real subdir/file &&
-		cd clone-repo/subdir/ &&
-		git pull &&
-		test real = $(cat file)
-	)
-'
-
-# From subdir-link, pulling should work as it does from
-# clone-repo/subdir/.
-#
-# Instead, the error pull gave was:
-#
-#   fatal: 'origin': unable to chdir or not a git archive
-#   fatal: The remote end hung up unexpectedly
-#
-# because git would find the .git/config for the "trash directory"
-# repo, not for the clone-repo repo.  The "trash directory" repo
-# had no entry for origin.  Git found the wrong .git because
-# git rev-parse --show-cdup printed a path relative to
-# clone-repo/subdir/, not subdir-link/.  Git rev-parse --show-cdup
-# used the correct .git, but when the git pull shell script did
-# "cd `git rev-parse --show-cdup`", it ended up in the wrong
-# directory.  A POSIX shell's "cd" works a little differently
-# than chdir() in C; "cd -P" is much closer to chdir().
-#
-test_expect_success 'pulling from symlinked subdir' '
-	(
-		echo link >subdir/file &&
-		git commit -m link subdir/file &&
-		cd subdir-link/ &&
-		git pull &&
-		test link = $(cat file)
-	)
-'
-
-# Prove that the remote end really is a repo, and other commands
-# work fine in this context.  It's just that "git pull" breaks.
-#
-test_expect_success 'pushing from symlinked subdir' '
-	(
-		cd subdir-link/ &&
-		echo push >file &&
-		git commit -m push ./file &&
-		git push
-	) &&
-	test push = $(git show HEAD:subdir/file)
-'
-
-test_done
diff --git a/t/t5522-pull-symlink.sh b/t/t5522-pull-symlink.sh
new file mode 100755
index 0000000000..5672b51e2e
--- /dev/null
+++ b/t/t5522-pull-symlink.sh
@@ -0,0 +1,78 @@
+#!/bin/sh
+
+test_description='pulling from symlinked subdir'
+
+. ./test-lib.sh
+
+# The scenario we are building:
+#
+#   trash\ directory/
+#     clone-repo/
+#       subdir/
+#         bar
+#     subdir-link -> clone-repo/subdir/
+#
+# The working directory is subdir-link.
+
+mkdir subdir
+echo file >subdir/file
+git add subdir/file
+git commit -q -m file
+git clone -q . clone-repo
+ln -s clone-repo/subdir/ subdir-link
+
+
+# Demonstrate that things work if we just avoid the symlink
+#
+test_expect_success 'pulling from real subdir' '
+	(
+		echo real >subdir/file &&
+		git commit -m real subdir/file &&
+		cd clone-repo/subdir/ &&
+		git pull &&
+		test real = $(cat file)
+	)
+'
+
+# From subdir-link, pulling should work as it does from
+# clone-repo/subdir/.
+#
+# Instead, the error pull gave was:
+#
+#   fatal: 'origin': unable to chdir or not a git archive
+#   fatal: The remote end hung up unexpectedly
+#
+# because git would find the .git/config for the "trash directory"
+# repo, not for the clone-repo repo.  The "trash directory" repo
+# had no entry for origin.  Git found the wrong .git because
+# git rev-parse --show-cdup printed a path relative to
+# clone-repo/subdir/, not subdir-link/.  Git rev-parse --show-cdup
+# used the correct .git, but when the git pull shell script did
+# "cd `git rev-parse --show-cdup`", it ended up in the wrong
+# directory.  A POSIX shell's "cd" works a little differently
+# than chdir() in C; "cd -P" is much closer to chdir().
+#
+test_expect_success 'pulling from symlinked subdir' '
+	(
+		echo link >subdir/file &&
+		git commit -m link subdir/file &&
+		cd subdir-link/ &&
+		git pull &&
+		test link = $(cat file)
+	)
+'
+
+# Prove that the remote end really is a repo, and other commands
+# work fine in this context.  It's just that "git pull" breaks.
+#
+test_expect_success 'pushing from symlinked subdir' '
+	(
+		cd subdir-link/ &&
+		echo push >file &&
+		git commit -m push ./file &&
+		git push
+	) &&
+	test push = $(git show HEAD:subdir/file)
+'
+
+test_done
diff --git a/t/t5540-http-push.sh b/t/t5540-http-push.sh
index 10e5fd0d5a..c46592f03d 100755
--- a/t/t5540-http-push.sh
+++ b/t/t5540-http-push.sh
@@ -11,6 +11,7 @@ This test runs various sanity checks on http-push.'
 
 ROOT_PATH="$PWD"
 LIB_HTTPD_DAV=t
+LIB_HTTPD_PORT=${LIB_HTTPD_PORT-'5540'}
 
 if git http-push > /dev/null 2>&1 || [ $? -eq 128 ]
 then
@@ -20,13 +21,7 @@ then
 fi
 
 . "$TEST_DIRECTORY"/lib-httpd.sh
-
-if ! start_httpd >&3 2>&4
-then
-	say "skipping test, web server setup failed"
-	test_done
-	exit
-fi
+start_httpd
 
 test_expect_success 'setup remote repository' '
 	cd "$ROOT_PATH" &&
diff --git a/t/t5550-http-fetch.sh b/t/t5550-http-fetch.sh
new file mode 100755
index 0000000000..05b1b62cb6
--- /dev/null
+++ b/t/t5550-http-fetch.sh
@@ -0,0 +1,57 @@
+#!/bin/sh
+
+test_description='test fetching over http'
+. ./test-lib.sh
+
+if test -n "$NO_CURL"; then
+	say 'skipping test, git built without http support'
+	test_done
+fi
+
+. "$TEST_DIRECTORY"/lib-httpd.sh
+LIB_HTTPD_PORT=${LIB_HTTPD_PORT-'5550'}
+start_httpd
+
+test_expect_success 'setup repository' '
+	echo content >file &&
+	git add file &&
+	git commit -m one
+'
+
+test_expect_success 'create http-accessible bare repository' '
+	mkdir "$HTTPD_DOCUMENT_ROOT_PATH/repo.git" &&
+	(cd "$HTTPD_DOCUMENT_ROOT_PATH/repo.git" &&
+	 git --bare init &&
+	 echo "exec git update-server-info" >hooks/post-update &&
+	 chmod +x hooks/post-update
+	) &&
+	git remote add public "$HTTPD_DOCUMENT_ROOT_PATH/repo.git" &&
+	git push public master:master
+'
+
+test_expect_success 'clone http repository' '
+	git clone $HTTPD_URL/repo.git clone &&
+	test_cmp file clone/file
+'
+
+test_expect_success 'fetch changes via http' '
+	echo content >>file &&
+	git commit -a -m two &&
+	git push public
+	(cd clone && git pull) &&
+	test_cmp file clone/file
+'
+
+test_expect_success 'http remote detects correct HEAD' '
+	git push public master:other &&
+	(cd clone &&
+	 git remote set-head origin -d &&
+	 git remote set-head origin -a &&
+	 git symbolic-ref refs/remotes/origin/HEAD > output &&
+	 echo refs/remotes/origin/master > expect &&
+	 test_cmp expect output
+	)
+'
+
+stop_httpd
+test_done
diff --git a/t/t5705-clone-2gb.sh b/t/t5705-clone-2gb.sh
new file mode 100755
index 0000000000..9f52154cac
--- /dev/null
+++ b/t/t5705-clone-2gb.sh
@@ -0,0 +1,45 @@
+#!/bin/sh
+
+test_description='Test cloning a repository larger than 2 gigabyte'
+. ./test-lib.sh
+
+test -z "$GIT_TEST_CLONE_2GB" &&
+say "Skipping expensive 2GB clone test; enable it with GIT_TEST_CLONE_2GB=t" &&
+test_done &&
+exit
+
+test_expect_success 'setup' '
+
+	git config pack.compression 0 &&
+	git config pack.depth 0 &&
+	blobsize=$((20*1024*1024)) &&
+	blobcount=$((2*1024*1024*1024/$blobsize+1)) &&
+	i=1 &&
+	(while test $i -le $blobcount
+	 do
+		printf "Generating blob $i/$blobcount\r" >&2 &&
+		printf "blob\nmark :$i\ndata $blobsize\n" &&
+		#test-genrandom $i $blobsize &&
+		printf "%-${blobsize}s" $i &&
+		echo "M 100644 :$i $i" >> commit
+		i=$(($i+1)) ||
+		echo $? > exit-status
+	 done &&
+	 echo "commit refs/heads/master" &&
+	 echo "author A U Thor <author@email.com> 123456789 +0000" &&
+	 echo "committer C O Mitter <committer@email.com> 123456789 +0000" &&
+	 echo "data 5" &&
+	 echo ">2gb" &&
+	 cat commit) |
+	git fast-import &&
+	test ! -f exit-status
+
+'
+
+test_expect_success 'clone' '
+
+	git clone --bare --no-hardlinks . clone
+
+'
+
+test_done
diff --git a/t/t6023-merge-rename-nocruft.sh b/t/t6023-merge-rename-nocruft.sh
deleted file mode 100755
index 65be95fbaa..0000000000
--- a/t/t6023-merge-rename-nocruft.sh
+++ /dev/null
@@ -1,139 +0,0 @@
-#!/bin/sh
-
-test_description='Merge-recursive merging renames'
-. ./test-lib.sh
-
-test_expect_success setup \
-'
-cat >A <<\EOF &&
-a aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
-b bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb
-c cccccccccccccccccccccccccccccccccccccccccccccccc
-d dddddddddddddddddddddddddddddddddddddddddddddddd
-e eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee
-f ffffffffffffffffffffffffffffffffffffffffffffffff
-g gggggggggggggggggggggggggggggggggggggggggggggggg
-h hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
-i iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
-j jjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjj
-k kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
-l llllllllllllllllllllllllllllllllllllllllllllllll
-m mmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmm
-n nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
-o oooooooooooooooooooooooooooooooooooooooooooooooo
-EOF
-
-cat >M <<\EOF &&
-A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
-B BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
-C CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
-D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
-E EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
-F FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
-G GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
-H HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
-I IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
-J JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ
-K KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
-L LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
-M MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
-N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
-O OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
-EOF
-
-git add A M &&
-git commit -m "initial has A and M" &&
-git branch white &&
-git branch red &&
-git branch blue &&
-
-git checkout white &&
-sed -e "/^g /s/.*/g : white changes a line/" <A >B &&
-sed -e "/^G /s/.*/G : colored branch changes a line/" <M >N &&
-rm -f A M &&
-git update-index --add --remove A B M N &&
-git commit -m "white renames A->B, M->N" &&
-
-git checkout red &&
-echo created by red >R &&
-git update-index --add R &&
-git commit -m "red creates R" &&
-
-git checkout blue &&
-sed -e "/^o /s/.*/g : blue changes a line/" <A >B &&
-rm -f A &&
-mv B A &&
-git update-index A &&
-git commit -m "blue modify A" &&
-
-git checkout master'
-
-# This test broke in 65ac6e9c3f47807cb603af07a6a9e1a43bc119ae
-test_expect_success 'merge white into red (A->B,M->N)' \
-'
-	git checkout -b red-white red &&
-	git merge white &&
-	git write-tree >/dev/null || {
-		echo "BAD: merge did not complete"
-		return 1
-	}
-
-	test -f B || {
-		echo "BAD: B does not exist in working directory"
-		return 1
-	}
-	test -f N || {
-		echo "BAD: N does not exist in working directory"
-		return 1
-	}
-	test -f R || {
-		echo "BAD: R does not exist in working directory"
-		return 1
-	}
-
-	test -f A && {
-		echo "BAD: A still exists in working directory"
-		return 1
-	}
-	test -f M && {
-		echo "BAD: M still exists in working directory"
-		return 1
-	}
-	return 0
-'
-
-# This test broke in 8371234ecaaf6e14fe3f2082a855eff1bbd79ae9
-test_expect_success 'merge blue into white (A->B, mod A, A untracked)' \
-'
-	git checkout -b white-blue white &&
-	echo dirty >A &&
-	git merge blue &&
-	git write-tree >/dev/null || {
-		echo "BAD: merge did not complete"
-		return 1
-	}
-
-	test -f A || {
-		echo "BAD: A does not exist in working directory"
-		return 1
-	}
-	test `cat A` = dirty || {
-		echo "BAD: A content is wrong"
-		return 1
-	}
-	test -f B || {
-		echo "BAD: B does not exist in working directory"
-		return 1
-	}
-	test -f N || {
-		echo "BAD: N does not exist in working directory"
-		return 1
-	}
-	test -f M && {
-		echo "BAD: M still exists in working directory"
-		return 1
-	}
-	return 0
-'
-
-test_done
diff --git a/t/t6034-merge-rename-nocruft.sh b/t/t6034-merge-rename-nocruft.sh
new file mode 100755
index 0000000000..65be95fbaa
--- /dev/null
+++ b/t/t6034-merge-rename-nocruft.sh
@@ -0,0 +1,139 @@
+#!/bin/sh
+
+test_description='Merge-recursive merging renames'
+. ./test-lib.sh
+
+test_expect_success setup \
+'
+cat >A <<\EOF &&
+a aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
+b bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb
+c cccccccccccccccccccccccccccccccccccccccccccccccc
+d dddddddddddddddddddddddddddddddddddddddddddddddd
+e eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee
+f ffffffffffffffffffffffffffffffffffffffffffffffff
+g gggggggggggggggggggggggggggggggggggggggggggggggg
+h hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
+i iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
+j jjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjjj
+k kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
+l llllllllllllllllllllllllllllllllllllllllllllllll
+m mmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmm
+n nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
+o oooooooooooooooooooooooooooooooooooooooooooooooo
+EOF
+
+cat >M <<\EOF &&
+A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+B BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
+C CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
+D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
+E EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
+F FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+G GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+H HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
+I IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+J JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ
+K KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
+L LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
+M MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
+O OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
+EOF
+
+git add A M &&
+git commit -m "initial has A and M" &&
+git branch white &&
+git branch red &&
+git branch blue &&
+
+git checkout white &&
+sed -e "/^g /s/.*/g : white changes a line/" <A >B &&
+sed -e "/^G /s/.*/G : colored branch changes a line/" <M >N &&
+rm -f A M &&
+git update-index --add --remove A B M N &&
+git commit -m "white renames A->B, M->N" &&
+
+git checkout red &&
+echo created by red >R &&
+git update-index --add R &&
+git commit -m "red creates R" &&
+
+git checkout blue &&
+sed -e "/^o /s/.*/g : blue changes a line/" <A >B &&
+rm -f A &&
+mv B A &&
+git update-index A &&
+git commit -m "blue modify A" &&
+
+git checkout master'
+
+# This test broke in 65ac6e9c3f47807cb603af07a6a9e1a43bc119ae
+test_expect_success 'merge white into red (A->B,M->N)' \
+'
+	git checkout -b red-white red &&
+	git merge white &&
+	git write-tree >/dev/null || {
+		echo "BAD: merge did not complete"
+		return 1
+	}
+
+	test -f B || {
+		echo "BAD: B does not exist in working directory"
+		return 1
+	}
+	test -f N || {
+		echo "BAD: N does not exist in working directory"
+		return 1
+	}
+	test -f R || {
+		echo "BAD: R does not exist in working directory"
+		return 1
+	}
+
+	test -f A && {
+		echo "BAD: A still exists in working directory"
+		return 1
+	}
+	test -f M && {
+		echo "BAD: M still exists in working directory"
+		return 1
+	}
+	return 0
+'
+
+# This test broke in 8371234ecaaf6e14fe3f2082a855eff1bbd79ae9
+test_expect_success 'merge blue into white (A->B, mod A, A untracked)' \
+'
+	git checkout -b white-blue white &&
+	echo dirty >A &&
+	git merge blue &&
+	git write-tree >/dev/null || {
+		echo "BAD: merge did not complete"
+		return 1
+	}
+
+	test -f A || {
+		echo "BAD: A does not exist in working directory"
+		return 1
+	}
+	test `cat A` = dirty || {
+		echo "BAD: A content is wrong"
+		return 1
+	}
+	test -f B || {
+		echo "BAD: B does not exist in working directory"
+		return 1
+	}
+	test -f N || {
+		echo "BAD: N does not exist in working directory"
+		return 1
+	}
+	test -f M && {
+		echo "BAD: M still exists in working directory"
+		return 1
+	}
+	return 0
+'
+
+test_done
diff --git a/t/t7400-submodule-basic.sh b/t/t7400-submodule-basic.sh
index b8cb2df667..af690ec6c1 100755
--- a/t/t7400-submodule-basic.sh
+++ b/t/t7400-submodule-basic.sh
@@ -47,6 +47,55 @@ test_expect_success 'Prepare submodule testing' '
 	GIT_CONFIG=.gitmodules git config submodule.example.url git://example.com/init.git
 '
 
+test_expect_success 'Prepare submodule add testing' '
+	submodurl=$(pwd)
+	(
+		mkdir addtest &&
+		cd addtest &&
+		git init
+	)
+'
+
+test_expect_success 'submodule add' '
+	(
+		cd addtest &&
+		git submodule add "$submodurl" submod &&
+		git submodule init
+	)
+'
+
+test_expect_success 'submodule add with ./ in path' '
+	(
+		cd addtest &&
+		git submodule add "$submodurl" ././dotsubmod/./frotz/./ &&
+		git submodule init
+	)
+'
+
+test_expect_success 'submodule add with // in path' '
+	(
+		cd addtest &&
+		git submodule add "$submodurl" slashslashsubmod///frotz// &&
+		git submodule init
+	)
+'
+
+test_expect_success 'submodule add with /.. in path' '
+	(
+		cd addtest &&
+		git submodule add "$submodurl" dotdotsubmod/../realsubmod/frotz/.. &&
+		git submodule init
+	)
+'
+
+test_expect_success 'submodule add with ./, /.. and // in path' '
+	(
+		cd addtest &&
+		git submodule add "$submodurl" dot/dotslashsubmod/./../..////realsubmod2/a/b/c/d/../../../../frotz//.. &&
+		git submodule init
+	)
+'
+
 test_expect_success 'status should fail for unmapped paths' '
 	if git submodule status
 	then
diff --git a/t/t7502-status.sh b/t/t7502-status.sh
deleted file mode 100755
index 93f875f500..0000000000
--- a/t/t7502-status.sh
+++ /dev/null
@@ -1,400 +0,0 @@
-#!/bin/sh
-#
-# Copyright (c) 2007 Johannes E. Schindelin
-#
-
-test_description='git status'
-
-. ./test-lib.sh
-
-test_expect_success 'setup' '
-	: > tracked &&
-	: > modified &&
-	mkdir dir1 &&
-	: > dir1/tracked &&
-	: > dir1/modified &&
-	mkdir dir2 &&
-	: > dir1/tracked &&
-	: > dir1/modified &&
-	git add . &&
-
-	git status >output &&
-
-	test_tick &&
-	git commit -m initial &&
-	: > untracked &&
-	: > dir1/untracked &&
-	: > dir2/untracked &&
-	echo 1 > dir1/modified &&
-	echo 2 > dir2/modified &&
-	echo 3 > dir2/added &&
-	git add dir2/added
-'
-
-test_expect_success 'status (1)' '
-
-	grep "use \"git rm --cached <file>\.\.\.\" to unstage" output
-
-'
-
-cat > expect << \EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-EOF
-
-test_expect_success 'status (2)' '
-
-	git status > output &&
-	test_cmp expect output
-
-'
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files not listed (use -u option to show untracked files)
-EOF
-test_expect_success 'status -uno' '
-	mkdir dir3 &&
-	: > dir3/untracked1 &&
-	: > dir3/untracked2 &&
-	git status -uno >output &&
-	test_cmp expect output
-'
-
-test_expect_success 'status (status.showUntrackedFiles no)' '
-	git config status.showuntrackedfiles no
-	git status >output &&
-	test_cmp expect output
-'
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	dir3/
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status -unormal' '
-	git status -unormal >output &&
-	test_cmp expect output
-'
-
-test_expect_success 'status (status.showUntrackedFiles normal)' '
-	git config status.showuntrackedfiles normal
-	git status >output &&
-	test_cmp expect output
-'
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	dir3/untracked1
-#	dir3/untracked2
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status -uall' '
-	git status -uall >output &&
-	test_cmp expect output
-'
-test_expect_success 'status (status.showUntrackedFiles all)' '
-	git config status.showuntrackedfiles all
-	git status >output &&
-	rm -rf dir3 &&
-	git config --unset status.showuntrackedfiles &&
-	test_cmp expect output
-'
-
-cat > expect << \EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   ../dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	untracked
-#	../dir2/modified
-#	../dir2/untracked
-#	../expect
-#	../output
-#	../untracked
-EOF
-
-test_expect_success 'status with relative paths' '
-
-	(cd dir1 && git status) > output &&
-	test_cmp expect output
-
-'
-
-cat > expect << \EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-EOF
-
-test_expect_success 'status without relative paths' '
-
-	git config status.relativePaths false
-	(cd dir1 && git status) > output &&
-	test_cmp expect output
-
-'
-
-cat <<EOF >expect
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status of partial commit excluding new file in index' '
-	git status dir1/modified >output &&
-	test_cmp expect output
-'
-
-test_expect_success 'setup status submodule summary' '
-	test_create_repo sm && (
-		cd sm &&
-		>foo &&
-		git add foo &&
-		git commit -m "Add foo"
-	) &&
-	git add sm
-'
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#	new file:   sm
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status submodule summary is disabled by default' '
-	git status >output &&
-	test_cmp expect output
-'
-
-# we expect the same as the previous test
-test_expect_success 'status --untracked-files=all does not show submodule' '
-	git status --untracked-files=all >output &&
-	test_cmp expect output
-'
-
-head=$(cd sm && git rev-parse --short=7 --verify HEAD)
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD <file>..." to unstage)
-#
-#	new file:   dir2/added
-#	new file:   sm
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Modified submodules:
-#
-# * sm 0000000...$head (1):
-#   > Add foo
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status submodule summary' '
-	git config status.submodulesummary 10 &&
-	git status >output &&
-	test_cmp expect output
-'
-
-
-cat >expect <<EOF
-# On branch master
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-no changes added to commit (use "git add" and/or "git commit -a")
-EOF
-test_expect_success 'status submodule summary (clean submodule)' '
-	git commit -m "commit submodule" &&
-	git config status.submodulesummary 10 &&
-	test_must_fail git status >output &&
-	test_cmp expect output
-'
-
-cat >expect <<EOF
-# On branch master
-# Changes to be committed:
-#   (use "git reset HEAD^1 <file>..." to unstage)
-#
-#	new file:   dir2/added
-#	new file:   sm
-#
-# Changed but not updated:
-#   (use "git add <file>..." to update what will be committed)
-#   (use "git checkout -- <file>..." to discard changes in working directory)
-#
-#	modified:   dir1/modified
-#
-# Modified submodules:
-#
-# * sm 0000000...$head (1):
-#   > Add foo
-#
-# Untracked files:
-#   (use "git add <file>..." to include in what will be committed)
-#
-#	dir1/untracked
-#	dir2/modified
-#	dir2/untracked
-#	expect
-#	output
-#	untracked
-EOF
-test_expect_success 'status submodule summary (--amend)' '
-	git config status.submodulesummary 10 &&
-	git status --amend >output &&
-	test_cmp expect output
-'
-
-test_done
diff --git a/t/t7508-status.sh b/t/t7508-status.sh
new file mode 100755
index 0000000000..93f875f500
--- /dev/null
+++ b/t/t7508-status.sh
@@ -0,0 +1,400 @@
+#!/bin/sh
+#
+# Copyright (c) 2007 Johannes E. Schindelin
+#
+
+test_description='git status'
+
+. ./test-lib.sh
+
+test_expect_success 'setup' '
+	: > tracked &&
+	: > modified &&
+	mkdir dir1 &&
+	: > dir1/tracked &&
+	: > dir1/modified &&
+	mkdir dir2 &&
+	: > dir1/tracked &&
+	: > dir1/modified &&
+	git add . &&
+
+	git status >output &&
+
+	test_tick &&
+	git commit -m initial &&
+	: > untracked &&
+	: > dir1/untracked &&
+	: > dir2/untracked &&
+	echo 1 > dir1/modified &&
+	echo 2 > dir2/modified &&
+	echo 3 > dir2/added &&
+	git add dir2/added
+'
+
+test_expect_success 'status (1)' '
+
+	grep "use \"git rm --cached <file>\.\.\.\" to unstage" output
+
+'
+
+cat > expect << \EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+EOF
+
+test_expect_success 'status (2)' '
+
+	git status > output &&
+	test_cmp expect output
+
+'
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files not listed (use -u option to show untracked files)
+EOF
+test_expect_success 'status -uno' '
+	mkdir dir3 &&
+	: > dir3/untracked1 &&
+	: > dir3/untracked2 &&
+	git status -uno >output &&
+	test_cmp expect output
+'
+
+test_expect_success 'status (status.showUntrackedFiles no)' '
+	git config status.showuntrackedfiles no
+	git status >output &&
+	test_cmp expect output
+'
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	dir3/
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status -unormal' '
+	git status -unormal >output &&
+	test_cmp expect output
+'
+
+test_expect_success 'status (status.showUntrackedFiles normal)' '
+	git config status.showuntrackedfiles normal
+	git status >output &&
+	test_cmp expect output
+'
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	dir3/untracked1
+#	dir3/untracked2
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status -uall' '
+	git status -uall >output &&
+	test_cmp expect output
+'
+test_expect_success 'status (status.showUntrackedFiles all)' '
+	git config status.showuntrackedfiles all
+	git status >output &&
+	rm -rf dir3 &&
+	git config --unset status.showuntrackedfiles &&
+	test_cmp expect output
+'
+
+cat > expect << \EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   ../dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	untracked
+#	../dir2/modified
+#	../dir2/untracked
+#	../expect
+#	../output
+#	../untracked
+EOF
+
+test_expect_success 'status with relative paths' '
+
+	(cd dir1 && git status) > output &&
+	test_cmp expect output
+
+'
+
+cat > expect << \EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+EOF
+
+test_expect_success 'status without relative paths' '
+
+	git config status.relativePaths false
+	(cd dir1 && git status) > output &&
+	test_cmp expect output
+
+'
+
+cat <<EOF >expect
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status of partial commit excluding new file in index' '
+	git status dir1/modified >output &&
+	test_cmp expect output
+'
+
+test_expect_success 'setup status submodule summary' '
+	test_create_repo sm && (
+		cd sm &&
+		>foo &&
+		git add foo &&
+		git commit -m "Add foo"
+	) &&
+	git add sm
+'
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#	new file:   sm
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status submodule summary is disabled by default' '
+	git status >output &&
+	test_cmp expect output
+'
+
+# we expect the same as the previous test
+test_expect_success 'status --untracked-files=all does not show submodule' '
+	git status --untracked-files=all >output &&
+	test_cmp expect output
+'
+
+head=$(cd sm && git rev-parse --short=7 --verify HEAD)
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD <file>..." to unstage)
+#
+#	new file:   dir2/added
+#	new file:   sm
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Modified submodules:
+#
+# * sm 0000000...$head (1):
+#   > Add foo
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status submodule summary' '
+	git config status.submodulesummary 10 &&
+	git status >output &&
+	test_cmp expect output
+'
+
+
+cat >expect <<EOF
+# On branch master
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+no changes added to commit (use "git add" and/or "git commit -a")
+EOF
+test_expect_success 'status submodule summary (clean submodule)' '
+	git commit -m "commit submodule" &&
+	git config status.submodulesummary 10 &&
+	test_must_fail git status >output &&
+	test_cmp expect output
+'
+
+cat >expect <<EOF
+# On branch master
+# Changes to be committed:
+#   (use "git reset HEAD^1 <file>..." to unstage)
+#
+#	new file:   dir2/added
+#	new file:   sm
+#
+# Changed but not updated:
+#   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
+#
+#	modified:   dir1/modified
+#
+# Modified submodules:
+#
+# * sm 0000000...$head (1):
+#   > Add foo
+#
+# Untracked files:
+#   (use "git add <file>..." to include in what will be committed)
+#
+#	dir1/untracked
+#	dir2/modified
+#	dir2/untracked
+#	expect
+#	output
+#	untracked
+EOF
+test_expect_success 'status submodule summary (--amend)' '
+	git config status.submodulesummary 10 &&
+	git status --amend >output &&
+	test_cmp expect output
+'
+
+test_done
diff --git a/t/t9001-send-email.sh b/t/t9001-send-email.sh
index 08d5b91c91..e426c96fb7 100755
--- a/t/t9001-send-email.sh
+++ b/t/t9001-send-email.sh
@@ -88,7 +88,7 @@ cat >expected <<\EOF
 EOF
 test_expect_success \
     'Verify commandline' \
-    'diff commandline1 expected'
+    'test_cmp expected commandline1'
 
 cat >expected-show-all-headers <<\EOF
 0001-Second.patch
@@ -531,4 +531,15 @@ test_expect_success 'feed two files' '
 	test "z$(sed -n -e 2p subjects)" = "zSubject: [PATCH 2/2] add master"
 '
 
+test_expect_success 'in-reply-to but no threading' '
+	git send-email \
+		--dry-run \
+		--from="Example <nobody@example.com>" \
+		--to=nobody@example.com \
+		--in-reply-to="<in-reply-id@example.com>" \
+		--no-thread \
+		$patches |
+	grep "In-Reply-To: <in-reply-id@example.com>"
+'
+
 test_done
diff --git a/t/t9106-git-svn-dcommit-clobber-series.sh b/t/t9106-git-svn-dcommit-clobber-series.sh
deleted file mode 100755
index fd185011b7..0000000000
--- a/t/t9106-git-svn-dcommit-clobber-series.sh
+++ /dev/null
@@ -1,63 +0,0 @@
-#!/bin/sh
-#
-# Copyright (c) 2007 Eric Wong
-test_description='git svn dcommit clobber series'
-. ./lib-git-svn.sh
-
-test_expect_success 'initialize repo' '
-	mkdir import &&
-	cd import &&
-	awk "BEGIN { for (i = 1; i < 64; i++) { print i } }" > file
-	svn import -m "initial" . "$svnrepo" &&
-	cd .. &&
-	git svn init "$svnrepo" &&
-	git svn fetch &&
-	test -e file
-	'
-
-test_expect_success '(supposedly) non-conflicting change from SVN' '
-	test x"`sed -n -e 58p < file`" = x58 &&
-	test x"`sed -n -e 61p < file`" = x61 &&
-	svn co "$svnrepo" tmp &&
-	cd tmp &&
-		perl -i.bak -p -e "s/^58$/5588/" file &&
-		perl -i.bak -p -e "s/^61$/6611/" file &&
-		poke file &&
-		test x"`sed -n -e 58p < file`" = x5588 &&
-		test x"`sed -n -e 61p < file`" = x6611 &&
-		svn commit -m "58 => 5588, 61 => 6611" &&
-		cd ..
-	'
-
-test_expect_success 'some unrelated changes to git' "
-	echo hi > life &&
-	git update-index --add life &&
-	git commit -m hi-life &&
-	echo bye >> life &&
-	git commit -m bye-life life
-	"
-
-test_expect_success 'change file but in unrelated area' "
-	test x\"\`sed -n -e 4p < file\`\" = x4 &&
-	test x\"\`sed -n -e 7p < file\`\" = x7 &&
-	perl -i.bak -p -e 's/^4\$/4444/' file &&
-	perl -i.bak -p -e 's/^7\$/7777/' file &&
-	test x\"\`sed -n -e 4p < file\`\" = x4444 &&
-	test x\"\`sed -n -e 7p < file\`\" = x7777 &&
-	git commit -m '4 => 4444, 7 => 7777' file &&
-	git svn dcommit &&
-	svn up tmp &&
-	cd tmp &&
-		test x\"\`sed -n -e 4p < file\`\" = x4444 &&
-		test x\"\`sed -n -e 7p < file\`\" = x7777 &&
-		test x\"\`sed -n -e 58p < file\`\" = x5588 &&
-		test x\"\`sed -n -e 61p < file\`\" = x6611
-	"
-
-test_expect_success 'attempt to dcommit with a dirty index' '
-	echo foo >>file &&
-	git add file &&
-	test_must_fail git svn dcommit
-'
-
-test_done
diff --git a/t/t9108-git-svn-multi-glob.sh b/t/t9108-git-svn-multi-glob.sh
deleted file mode 100755
index 8f79c3f251..0000000000
--- a/t/t9108-git-svn-multi-glob.sh
+++ /dev/null
@@ -1,160 +0,0 @@
-#!/bin/sh
-# Copyright (c) 2007 Eric Wong
-test_description='git svn globbing refspecs'
-. ./lib-git-svn.sh
-
-cat > expect.end <<EOF
-the end
-hi
-start a new branch
-initial
-EOF
-
-test_expect_success 'test refspec globbing' '
-	mkdir -p trunk/src/a trunk/src/b trunk/doc &&
-	echo "hello world" > trunk/src/a/readme &&
-	echo "goodbye world" > trunk/src/b/readme &&
-	svn import -m "initial" trunk "$svnrepo"/trunk &&
-	svn co "$svnrepo" tmp &&
-	(
-		cd tmp &&
-		mkdir branches branches/v1 tags &&
-		svn add branches tags &&
-		svn cp trunk branches/v1/start &&
-		svn commit -m "start a new branch" &&
-		svn up &&
-		echo "hi" >> branches/v1/start/src/b/readme &&
-		poke branches/v1/start/src/b/readme &&
-		echo "hey" >> branches/v1/start/src/a/readme &&
-		poke branches/v1/start/src/a/readme &&
-		svn commit -m "hi" &&
-		svn up &&
-		svn cp branches/v1/start tags/end &&
-		echo "bye" >> tags/end/src/b/readme &&
-		poke tags/end/src/b/readme &&
-		echo "aye" >> tags/end/src/a/readme &&
-		poke tags/end/src/a/readme &&
-		svn commit -m "the end" &&
-		echo "byebye" >> tags/end/src/b/readme &&
-		poke tags/end/src/b/readme &&
-		svn commit -m "nothing to see here"
-	) &&
-	git config --add svn-remote.svn.url "$svnrepo" &&
-	git config --add svn-remote.svn.fetch \
-	                 "trunk/src/a:refs/remotes/trunk" &&
-	git config --add svn-remote.svn.branches \
-	                 "branches/*/*/src/a:refs/remotes/branches/*/*" &&
-	git config --add svn-remote.svn.tags\
-	                 "tags/*/src/a:refs/remotes/tags/*" &&
-	git svn multi-fetch &&
-	git log --pretty=oneline refs/remotes/tags/end | \
-	    sed -e "s/^.\{41\}//" > output.end &&
-	test_cmp expect.end output.end &&
-	test "`git rev-parse refs/remotes/tags/end~1`" = \
-		"`git rev-parse refs/remotes/branches/v1/start`" &&
-	test "`git rev-parse refs/remotes/branches/v1/start~2`" = \
-		"`git rev-parse refs/remotes/trunk`" &&
-	test_must_fail git rev-parse refs/remotes/tags/end@3
-	'
-
-echo try to try > expect.two
-echo nothing to see here >> expect.two
-cat expect.end >> expect.two
-
-test_expect_success 'test left-hand-side only globbing' '
-	git config --add svn-remote.two.url "$svnrepo" &&
-	git config --add svn-remote.two.fetch trunk:refs/remotes/two/trunk &&
-	git config --add svn-remote.two.branches \
-	                 "branches/*/*:refs/remotes/two/branches/*/*" &&
-	git config --add svn-remote.two.tags \
-	                 "tags/*:refs/remotes/two/tags/*" &&
-	(
-		cd tmp &&
-		echo "try try" >> tags/end/src/b/readme &&
-		poke tags/end/src/b/readme &&
-		svn commit -m "try to try"
-	) &&
-	git svn fetch two &&
-	test `git rev-list refs/remotes/two/tags/end | wc -l` -eq 6 &&
-	test `git rev-list refs/remotes/two/branches/v1/start | wc -l` -eq 3 &&
-	test `git rev-parse refs/remotes/two/branches/v1/start~2` = \
-	     `git rev-parse refs/remotes/two/trunk` &&
-	test `git rev-parse refs/remotes/two/tags/end~3` = \
-	     `git rev-parse refs/remotes/two/branches/v1/start` &&
-	git log --pretty=oneline refs/remotes/two/tags/end | \
-	    sed -e "s/^.\{41\}//" > output.two &&
-	test_cmp expect.two output.two
-	'
-cat > expect.four <<EOF
-adios
-adding more
-Changed 2 in v2/start
-Another versioned branch
-initial
-EOF
-
-test_expect_success 'test another branch' '
-	(
-		cd tmp &&
-		mkdir branches/v2 &&
-		svn add branches/v2 &&
-		svn cp trunk branches/v2/start &&
-		svn commit -m "Another versioned branch" &&
-		svn up &&
-		echo "hello" >> branches/v2/start/src/b/readme &&
-		poke branches/v2/start/src/b/readme &&
-		echo "howdy" >> branches/v2/start/src/a/readme &&
-		poke branches/v2/start/src/a/readme &&
-		svn commit -m "Changed 2 in v2/start" &&
-		svn up &&
-		svn cp branches/v2/start tags/next &&
-		echo "bye" >> tags/next/src/b/readme &&
-		poke tags/next/src/b/readme &&
-		echo "aye" >> tags/next/src/a/readme &&
-		poke tags/next/src/a/readme &&
-		svn commit -m "adding more" &&
-		echo "byebye" >> tags/next/src/b/readme &&
-		poke tags/next/src/b/readme &&
-		svn commit -m "adios"
-	) &&
-	git config --add svn-remote.four.url "$svnrepo" &&
-	git config --add svn-remote.four.fetch trunk:refs/remotes/four/trunk &&
-	git config --add svn-remote.four.branches \
-	                 "branches/*/*:refs/remotes/four/branches/*/*" &&
-	git config --add svn-remote.four.tags \
-	                 "tags/*:refs/remotes/four/tags/*" &&
-	git svn fetch four &&
-	test `git rev-list refs/remotes/four/tags/next | wc -l` -eq 5 &&
-	test `git rev-list refs/remotes/four/branches/v2/start | wc -l` -eq 3 &&
-	test `git rev-parse refs/remotes/four/branches/v2/start~2` = \
-	     `git rev-parse refs/remotes/four/trunk` &&
-	test `git rev-parse refs/remotes/four/tags/next~2` = \
-	     `git rev-parse refs/remotes/four/branches/v2/start` &&
-	git log --pretty=oneline refs/remotes/four/tags/next | \
-	    sed -e "s/^.\{41\}//" > output.four &&
-	test_cmp expect.four output.four
-	'
-
-echo "Only one set of wildcard directories" \
-     "(e.g. '*' or '*/*/*') is supported: 'branches/*/t/*'" > expect.three
-echo "" >> expect.three
-
-test_expect_success 'test disallow multiple globs' '
-	git config --add svn-remote.three.url "$svnrepo" &&
-	git config --add svn-remote.three.fetch \
-	                 trunk:refs/remotes/three/trunk &&
-	git config --add svn-remote.three.branches \
-	                 "branches/*/t/*:refs/remotes/three/branches/*/*" &&
-	git config --add svn-remote.three.tags \
-	                 "tags/*:refs/remotes/three/tags/*" &&
-	(
-		cd tmp &&
-		echo "try try" >> tags/end/src/b/readme &&
-		poke tags/end/src/b/readme &&
-		svn commit -m "try to try"
-	) &&
-	test_must_fail git svn fetch three 2> stderr.three &&
-	test_cmp expect.three stderr.three
-	'
-
-test_done
diff --git a/t/t9109-git-svn-multi-glob.sh b/t/t9109-git-svn-multi-glob.sh
new file mode 100755
index 0000000000..8f79c3f251
--- /dev/null
+++ b/t/t9109-git-svn-multi-glob.sh
@@ -0,0 +1,160 @@
+#!/bin/sh
+# Copyright (c) 2007 Eric Wong
+test_description='git svn globbing refspecs'
+. ./lib-git-svn.sh
+
+cat > expect.end <<EOF
+the end
+hi
+start a new branch
+initial
+EOF
+
+test_expect_success 'test refspec globbing' '
+	mkdir -p trunk/src/a trunk/src/b trunk/doc &&
+	echo "hello world" > trunk/src/a/readme &&
+	echo "goodbye world" > trunk/src/b/readme &&
+	svn import -m "initial" trunk "$svnrepo"/trunk &&
+	svn co "$svnrepo" tmp &&
+	(
+		cd tmp &&
+		mkdir branches branches/v1 tags &&
+		svn add branches tags &&
+		svn cp trunk branches/v1/start &&
+		svn commit -m "start a new branch" &&
+		svn up &&
+		echo "hi" >> branches/v1/start/src/b/readme &&
+		poke branches/v1/start/src/b/readme &&
+		echo "hey" >> branches/v1/start/src/a/readme &&
+		poke branches/v1/start/src/a/readme &&
+		svn commit -m "hi" &&
+		svn up &&
+		svn cp branches/v1/start tags/end &&
+		echo "bye" >> tags/end/src/b/readme &&
+		poke tags/end/src/b/readme &&
+		echo "aye" >> tags/end/src/a/readme &&
+		poke tags/end/src/a/readme &&
+		svn commit -m "the end" &&
+		echo "byebye" >> tags/end/src/b/readme &&
+		poke tags/end/src/b/readme &&
+		svn commit -m "nothing to see here"
+	) &&
+	git config --add svn-remote.svn.url "$svnrepo" &&
+	git config --add svn-remote.svn.fetch \
+	                 "trunk/src/a:refs/remotes/trunk" &&
+	git config --add svn-remote.svn.branches \
+	                 "branches/*/*/src/a:refs/remotes/branches/*/*" &&
+	git config --add svn-remote.svn.tags\
+	                 "tags/*/src/a:refs/remotes/tags/*" &&
+	git svn multi-fetch &&
+	git log --pretty=oneline refs/remotes/tags/end | \
+	    sed -e "s/^.\{41\}//" > output.end &&
+	test_cmp expect.end output.end &&
+	test "`git rev-parse refs/remotes/tags/end~1`" = \
+		"`git rev-parse refs/remotes/branches/v1/start`" &&
+	test "`git rev-parse refs/remotes/branches/v1/start~2`" = \
+		"`git rev-parse refs/remotes/trunk`" &&
+	test_must_fail git rev-parse refs/remotes/tags/end@3
+	'
+
+echo try to try > expect.two
+echo nothing to see here >> expect.two
+cat expect.end >> expect.two
+
+test_expect_success 'test left-hand-side only globbing' '
+	git config --add svn-remote.two.url "$svnrepo" &&
+	git config --add svn-remote.two.fetch trunk:refs/remotes/two/trunk &&
+	git config --add svn-remote.two.branches \
+	                 "branches/*/*:refs/remotes/two/branches/*/*" &&
+	git config --add svn-remote.two.tags \
+	                 "tags/*:refs/remotes/two/tags/*" &&
+	(
+		cd tmp &&
+		echo "try try" >> tags/end/src/b/readme &&
+		poke tags/end/src/b/readme &&
+		svn commit -m "try to try"
+	) &&
+	git svn fetch two &&
+	test `git rev-list refs/remotes/two/tags/end | wc -l` -eq 6 &&
+	test `git rev-list refs/remotes/two/branches/v1/start | wc -l` -eq 3 &&
+	test `git rev-parse refs/remotes/two/branches/v1/start~2` = \
+	     `git rev-parse refs/remotes/two/trunk` &&
+	test `git rev-parse refs/remotes/two/tags/end~3` = \
+	     `git rev-parse refs/remotes/two/branches/v1/start` &&
+	git log --pretty=oneline refs/remotes/two/tags/end | \
+	    sed -e "s/^.\{41\}//" > output.two &&
+	test_cmp expect.two output.two
+	'
+cat > expect.four <<EOF
+adios
+adding more
+Changed 2 in v2/start
+Another versioned branch
+initial
+EOF
+
+test_expect_success 'test another branch' '
+	(
+		cd tmp &&
+		mkdir branches/v2 &&
+		svn add branches/v2 &&
+		svn cp trunk branches/v2/start &&
+		svn commit -m "Another versioned branch" &&
+		svn up &&
+		echo "hello" >> branches/v2/start/src/b/readme &&
+		poke branches/v2/start/src/b/readme &&
+		echo "howdy" >> branches/v2/start/src/a/readme &&
+		poke branches/v2/start/src/a/readme &&
+		svn commit -m "Changed 2 in v2/start" &&
+		svn up &&
+		svn cp branches/v2/start tags/next &&
+		echo "bye" >> tags/next/src/b/readme &&
+		poke tags/next/src/b/readme &&
+		echo "aye" >> tags/next/src/a/readme &&
+		poke tags/next/src/a/readme &&
+		svn commit -m "adding more" &&
+		echo "byebye" >> tags/next/src/b/readme &&
+		poke tags/next/src/b/readme &&
+		svn commit -m "adios"
+	) &&
+	git config --add svn-remote.four.url "$svnrepo" &&
+	git config --add svn-remote.four.fetch trunk:refs/remotes/four/trunk &&
+	git config --add svn-remote.four.branches \
+	                 "branches/*/*:refs/remotes/four/branches/*/*" &&
+	git config --add svn-remote.four.tags \
+	                 "tags/*:refs/remotes/four/tags/*" &&
+	git svn fetch four &&
+	test `git rev-list refs/remotes/four/tags/next | wc -l` -eq 5 &&
+	test `git rev-list refs/remotes/four/branches/v2/start | wc -l` -eq 3 &&
+	test `git rev-parse refs/remotes/four/branches/v2/start~2` = \
+	     `git rev-parse refs/remotes/four/trunk` &&
+	test `git rev-parse refs/remotes/four/tags/next~2` = \
+	     `git rev-parse refs/remotes/four/branches/v2/start` &&
+	git log --pretty=oneline refs/remotes/four/tags/next | \
+	    sed -e "s/^.\{41\}//" > output.four &&
+	test_cmp expect.four output.four
+	'
+
+echo "Only one set of wildcard directories" \
+     "(e.g. '*' or '*/*/*') is supported: 'branches/*/t/*'" > expect.three
+echo "" >> expect.three
+
+test_expect_success 'test disallow multiple globs' '
+	git config --add svn-remote.three.url "$svnrepo" &&
+	git config --add svn-remote.three.fetch \
+	                 trunk:refs/remotes/three/trunk &&
+	git config --add svn-remote.three.branches \
+	                 "branches/*/t/*:refs/remotes/three/branches/*/*" &&
+	git config --add svn-remote.three.tags \
+	                 "tags/*:refs/remotes/three/tags/*" &&
+	(
+		cd tmp &&
+		echo "try try" >> tags/end/src/b/readme &&
+		poke tags/end/src/b/readme &&
+		svn commit -m "try to try"
+	) &&
+	test_must_fail git svn fetch three 2> stderr.three &&
+	test_cmp expect.three stderr.three
+	'
+
+test_done
diff --git a/t/t9137-git-svn-dcommit-clobber-series.sh b/t/t9137-git-svn-dcommit-clobber-series.sh
new file mode 100755
index 0000000000..fd185011b7
--- /dev/null
+++ b/t/t9137-git-svn-dcommit-clobber-series.sh
@@ -0,0 +1,63 @@
+#!/bin/sh
+#
+# Copyright (c) 2007 Eric Wong
+test_description='git svn dcommit clobber series'
+. ./lib-git-svn.sh
+
+test_expect_success 'initialize repo' '
+	mkdir import &&
+	cd import &&
+	awk "BEGIN { for (i = 1; i < 64; i++) { print i } }" > file
+	svn import -m "initial" . "$svnrepo" &&
+	cd .. &&
+	git svn init "$svnrepo" &&
+	git svn fetch &&
+	test -e file
+	'
+
+test_expect_success '(supposedly) non-conflicting change from SVN' '
+	test x"`sed -n -e 58p < file`" = x58 &&
+	test x"`sed -n -e 61p < file`" = x61 &&
+	svn co "$svnrepo" tmp &&
+	cd tmp &&
+		perl -i.bak -p -e "s/^58$/5588/" file &&
+		perl -i.bak -p -e "s/^61$/6611/" file &&
+		poke file &&
+		test x"`sed -n -e 58p < file`" = x5588 &&
+		test x"`sed -n -e 61p < file`" = x6611 &&
+		svn commit -m "58 => 5588, 61 => 6611" &&
+		cd ..
+	'
+
+test_expect_success 'some unrelated changes to git' "
+	echo hi > life &&
+	git update-index --add life &&
+	git commit -m hi-life &&
+	echo bye >> life &&
+	git commit -m bye-life life
+	"
+
+test_expect_success 'change file but in unrelated area' "
+	test x\"\`sed -n -e 4p < file\`\" = x4 &&
+	test x\"\`sed -n -e 7p < file\`\" = x7 &&
+	perl -i.bak -p -e 's/^4\$/4444/' file &&
+	perl -i.bak -p -e 's/^7\$/7777/' file &&
+	test x\"\`sed -n -e 4p < file\`\" = x4444 &&
+	test x\"\`sed -n -e 7p < file\`\" = x7777 &&
+	git commit -m '4 => 4444, 7 => 7777' file &&
+	git svn dcommit &&
+	svn up tmp &&
+	cd tmp &&
+		test x\"\`sed -n -e 4p < file\`\" = x4444 &&
+		test x\"\`sed -n -e 7p < file\`\" = x7777 &&
+		test x\"\`sed -n -e 58p < file\`\" = x5588 &&
+		test x\"\`sed -n -e 61p < file\`\" = x6611
+	"
+
+test_expect_success 'attempt to dcommit with a dirty index' '
+	echo foo >>file &&
+	git add file &&
+	test_must_fail git svn dcommit
+'
+
+test_done
diff --git a/t/test-lib.sh b/t/test-lib.sh
index 7a847ecbde..1e01a912ab 100644
--- a/t/test-lib.sh
+++ b/t/test-lib.sh
@@ -464,7 +464,7 @@ test_done () {
 	trap - EXIT
 	test_results_dir="$TEST_DIRECTORY/test-results"
 	mkdir -p "$test_results_dir"
-	test_results_path="$test_results_dir/${0%-*}-$$"
+	test_results_path="$test_results_dir/${0%.sh}-$$"
 
 	echo "total $test_count" >> $test_results_path
 	echo "success $test_success" >> $test_results_path
diff --git a/unpack-trees.c b/unpack-trees.c
index e547282ed5..da2e3c0915 100644
--- a/unpack-trees.c
+++ b/unpack-trees.c
@@ -52,36 +52,17 @@ static void add_entry(struct unpack_trees_options *o, struct cache_entry *ce,
 	add_index_entry(&o->result, new, ADD_CACHE_OK_TO_ADD|ADD_CACHE_OK_TO_REPLACE|ADD_CACHE_SKIP_DFCHECK);
 }
 
-/* Unlink the last component and attempt to remove leading
- * directories, in case this unlink is the removal of the
- * last entry in the directory -- empty directories are removed.
+/*
+ * Unlink the last component and schedule the leading directories for
+ * removal, such that empty directories get removed.
  */
 static void unlink_entry(struct cache_entry *ce)
 {
-	char *cp, *prev;
-	char *name = ce->name;
-
-	if (has_symlink_or_noent_leading_path(ce_namelen(ce), ce->name))
+	if (has_symlink_or_noent_leading_path(ce->name, ce_namelen(ce)))
 		return;
-	if (unlink(name))
+	if (unlink(ce->name))
 		return;
-	prev = NULL;
-	while (1) {
-		int status;
-		cp = strrchr(name, '/');
-		if (prev)
-			*prev = '/';
-		if (!cp)
-			break;
-
-		*cp = 0;
-		status = rmdir(name);
-		if (status) {
-			*cp = '/';
-			break;
-		}
-		prev = cp;
-	}
+	schedule_dir_for_removal(ce->name, ce_namelen(ce));
 }
 
 static struct checkout state;
@@ -112,11 +93,10 @@ static int check_updates(struct unpack_trees_options *o)
 			display_progress(progress, ++cnt);
 			if (o->update)
 				unlink_entry(ce);
-			remove_index_entry_at(&o->result, i);
-			i--;
-			continue;
 		}
 	}
+	remove_marked_cache_entries(&o->result);
+	remove_scheduled_dirs();
 
 	for (i = 0; i < index->cache_nr; i++) {
 		struct cache_entry *ce = index->cache[i];
@@ -380,8 +360,10 @@ int unpack_trees(unsigned len, struct tree_desc *t, struct unpack_trees_options
 
 	memset(&o->result, 0, sizeof(o->result));
 	o->result.initialized = 1;
-	if (o->src_index)
-		o->result.timestamp = o->src_index->timestamp;
+	if (o->src_index) {
+		o->result.timestamp.sec = o->src_index->timestamp.sec;
+		o->result.timestamp.nsec = o->src_index->timestamp.nsec;
+	}
 	o->merge_size = len;
 
 	if (!dfc)
@@ -446,7 +428,7 @@ static int verify_uptodate(struct cache_entry *ce,
 {
 	struct stat st;
 
-	if (o->index_only || o->reset)
+	if (o->index_only || o->reset || ce_uptodate(ce))
 		return 0;
 
 	if (!lstat(ce->name, &st)) {
@@ -583,7 +565,7 @@ static int verify_absent(struct cache_entry *ce, const char *action,
 	if (o->index_only || o->reset || !o->update)
 		return 0;
 
-	if (has_symlink_or_noent_leading_path(ce_namelen(ce), ce->name))
+	if (has_symlink_or_noent_leading_path(ce->name, ce_namelen(ce)))
 		return 0;
 
 	if (!lstat(ce->name, &st)) {
diff --git a/upload-pack.c b/upload-pack.c
index e15ebdc287..a49d872447 100644
--- a/upload-pack.c
+++ b/upload-pack.c
@@ -397,12 +397,11 @@ static int get_common_commits(void)
 	static char line[1000];
 	unsigned char sha1[20];
 	char hex[41], last_hex[41];
-	int len;
 
 	save_commit_buffer = 0;
 
 	for(;;) {
-		len = packet_read_line(0, line, sizeof(line));
+		int len = packet_read_line(0, line, sizeof(line));
 		reset_timeout();
 
 		if (!len) {
@@ -410,7 +409,7 @@ static int get_common_commits(void)
 				packet_write(1, "NAK\n");
 			continue;
 		}
-		len = strip(line, len);
+		strip(line, len);
 		if (!prefixcmp(line, "have ")) {
 			switch (got_sha1(line+5, sha1)) {
 			case -1: /* they have what we do not */
diff --git a/xdiff-interface.c b/xdiff-interface.c
index d782f06d99..b9b0db8d86 100644
--- a/xdiff-interface.c
+++ b/xdiff-interface.c
@@ -15,11 +15,10 @@ static int parse_num(char **cp_p, int *num_p)
 {
 	char *cp = *cp_p;
 	int num = 0;
-	int read_some;
 
 	while ('0' <= *cp && *cp <= '9')
 		num = num * 10 + *cp++ - '0';
-	if (!(read_some = cp - *cp_p))
+	if (!(cp - *cp_p))
 		return -1;
 	*cp_p = cp;
 	*num_p = num;
diff --git a/xdiff/xdiffi.c b/xdiff/xdiffi.c
index 3e97462bdd..02184d9cde 100644
--- a/xdiff/xdiffi.c
+++ b/xdiff/xdiffi.c
@@ -293,15 +293,14 @@ int xdl_recs_cmp(diffdata_t *dd1, long off1, long lim1,
 		for (; off1 < lim1; off1++)
 			rchg1[rindex1[off1]] = 1;
 	} else {
-		long ec;
 		xdpsplit_t spl;
 		spl.i1 = spl.i2 = 0;
 
 		/*
 		 * Divide ...
 		 */
-		if ((ec = xdl_split(ha1, off1, lim1, ha2, off2, lim2, kvdf, kvdb,
-				    need_min, &spl, xenv)) < 0) {
+		if (xdl_split(ha1, off1, lim1, ha2, off2, lim2, kvdf, kvdb,
+			      need_min, &spl, xenv) < 0) {
 
 			return -1;
 		}
diff --git a/xdiff/xemit.c b/xdiff/xemit.c
index 05bfa41f10..c4bedf0d1c 100644
--- a/xdiff/xemit.c
+++ b/xdiff/xemit.c
@@ -132,7 +132,7 @@ int xdl_emit_diff(xdfenv_t *xe, xdchange_t *xscr, xdemitcb_t *ecb,
 	if (xecfg->flags & XDL_EMIT_COMMON)
 		return xdl_emit_common(xe, xscr, ecb, xecfg);
 
-	for (xch = xche = xscr; xch; xch = xche->next) {
+	for (xch = xscr; xch; xch = xche->next) {
 		xche = xdl_get_hunk(xch, xecfg);
 
 		s1 = XDL_MAX(xch->i1 - xecfg->ctxlen, 0);